miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40022_ath-MIR161:mirbase
Length = 173
Score = 295 bits (149), Expect = 6e-81
Identities = 165/173 (95%)
Strand = Plus / Plus
Query: 1 tgcttgatctcggtttttgaccagtttattgcgtcgatcaatgcattgaaagtgactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttgatctcggtttttgaccagtttattgcgtcgatcaatgcattgaaagtgactaca 60
Query: 61 tcggggttccgannnnnnnngttcttcatatgatgaagcggaaacagtaatcaaccctgg 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggggttccgattttttttgttcttcatatgatgaagcggaaacagtaatcaaccctgg 120
Query: 121 tttagtcactttcactgcattaatcaatgcatttgtaaaaagagggaaaagca 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttagtcactttcactgcattaatcaatgcatttgtaaaaagagggaaaagca 173
>39811_aly-MIR161:mirbase
Length = 122
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 108 taatcaaccctggtttagtcactttcactgcattaatc 145
|||||||||| |||||||||||||||||||||||||||
Sbjct: 85 taatcaaccccggtttagtcactttcactgcattaatc 122
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 36 gatcaatgcattgaaagtgactacatcggggtt 68
|||||||||||||||||||||||||||||||||
Sbjct: 1 gatcaatgcattgaaagtgactacatcggggtt 33
>39810_aly-MIR161:mirbase
Length = 122
Score = 67.9 bits (34), Expect = 2e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 108 taatcaaccctggtttagtcactttcactgcattaatc 145
|||||||||| |||||||||||||||||||||||||||
Sbjct: 85 taatcaaccccggtttagtcactttcactgcattaatc 122
Score = 65.9 bits (33), Expect = 9e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 36 gatcaatgcattgaaagtgactacatcggggtt 68
|||||||||||||||||||||||||||||||||
Sbjct: 1 gatcaatgcattgaaagtgactacatcggggtt 33
>40262_bna-MIR161:mirbase
Length = 135
Score = 56.0 bits (28), Expect = 9e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 25 tttattgcgtcgatcaatgcattgaaagtgactaca 60
|||||||| |||||||||||| ||||||||||||||
Sbjct: 1 tttattgcttcgatcaatgcactgaaagtgactaca 36
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 36 gatcaatgcattgaaagtgactacatc 62
|||||| ||||||||||||||||||||
Sbjct: 123 gatcaacgcattgaaagtgactacatc 97
