miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46937_ath-miR162a:pmrd
Length = 140
Score = 278 bits (140), Expect = 1e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 tagttggaagaagagtgagagtcgctggaggcagcggttcatcgatctcttcctgtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagttggaagaagagtgagagtcgctggaggcagcggttcatcgatctcttcctgtgaac 60
Query: 61 acattaaaaatgtaaaagcatgaatagatcgataaacctctgcatccagcgtttgcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acattaaaaatgtaaaagcatgaatagatcgataaacctctgcatccagcgtttgcctct 120
Query: 121 tgtatctttcttattgactt 140
||||||||||||||||||||
Sbjct: 121 tgtatctttcttattgactt 140
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 65.9 bits (33), Expect = 7e-12
Identities = 46/49 (93%), Gaps = 1/49 (2%)
Strand = Plus / Minus
Query: 11 aagagtgagagtcgctggaggcagcggttcatcgatctcttcctgtgaa 59
|||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 115 aagagtga-agtcgctggaggcagcggttcatcgatcaattcctgtgaa 68
>48423_cpa-miR162a:pmrd
Length = 109
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
|||| |||||||||||||||||||||||||||||||
Sbjct: 8 agtcactggaggcagcggttcatcgatctcttcctg 43
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 79 catgaatagatcgataaacctctgcatccagcgtt 113
||||||| |||||||||||||||||||||||||||
Sbjct: 70 catgaatcgatcgataaacctctgcatccagcgtt 104
>46938_ath-miR162b:pmrd
Length = 111
Score = 63.9 bits (32), Expect = 3e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 20 agtcgctggaggcagcggttcatcgatctcttcctgtgaa 59
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 7 agtcgctggaggcagcggttcatcgatcaattcctgtgaa 46
>54387_rco-miR162:pmrd
Length = 96
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 78 gcatgaatagatcgataaacctctgcatccagc 110
|||||||| ||||||||||||||||||||||||
Sbjct: 64 gcatgaatcgatcgataaacctctgcatccagc 96
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 74 aaaagcatgaatagatcgataaacctctgcatccagcg 111
|||| |||||| |||||||||||||||||||||||||
Sbjct: 43 aaaaacatgaaccgatcgataaacctctgcatccagcg 6
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatctcttcctg 65
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 74 aaaagcatgaatagatcgataaacctctgcatccagcg 111
|||| |||||| |||||||||||||||||||||||||
Sbjct: 43 aaaaacatgaaccgatcgataaacctctgcatccagcg 6
>51616_ptc-miR162a:pmrd
Length = 107
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatctcttcctg 41
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 74 aaaagcatgaatagatcgataaacctctgcatccagcg 111
|||| |||||| |||||||||||||||||||||||||
Sbjct: 63 aaaaacatgaaccgatcgataaacctctgcatccagcg 100
>48493_ghr-miR162a:pmrd
Length = 148
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||||||||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctg 54
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 79 catgaatagatcgataaacctctgcatccagcg 111
||||||| |||||||||||||||||||||||||
Sbjct: 84 catgaatcgatcgataaacctctgcatccagcg 116
>48545_gma-miR162a:pmrd
Length = 102
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 79 catgaatagatcgataaacctctgcatccagcg 111
||||||| |||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatccagcg 95
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
|||| ||||| |||||||||||||||||||||||||
Sbjct: 5 agtcactggatgcagcggttcatcgatctcttcctg 40
>54784_vvi-miR162:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 20 agtcgctggaggcagcggttcatcgatctcttcctg 55
|||| ||||| |||||||||||||||||||||||||
Sbjct: 4 agtcactggatgcagcggttcatcgatctcttcctg 39
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatccagcgtt 113
|||||||||||||||||||||||||
Sbjct: 73 tcgataaacctctgcatccagcgtt 97
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||| ||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctg 64
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 87 gatcgataaacctctgcatccag 109
|||||||||||||||||||||||
Sbjct: 29 gatcgataaacctctgcatccag 7
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||| ||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctg 66
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 87 gatcgataaacctctgcatccag 109
|||||||||||||||||||||||
Sbjct: 31 gatcgataaacctctgcatccag 9
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||| ||||||
Sbjct: 96 ctggaggcagcggttcatcgatcttttcctg 66
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 87 gatcgataaacctctgcatccag 109
|||||||||||||||||||||||
Sbjct: 31 gatcgataaacctctgcatccag 9
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||| ||||||
Sbjct: 94 ctggaggcagcggttcatcgatcttttcctg 64
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 87 gatcgataaacctctgcatccag 109
|||||||||||||||||||||||
Sbjct: 29 gatcgataaacctctgcatccag 7
>51618_ptc-miR162c:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||| ||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctg 41
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatccag 109
|||||||||||||||||||||||
Sbjct: 76 gatcgataaacctctgcatccag 98
>51617_ptc-miR162b:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
|||||||||||||||||||||||| ||||||
Sbjct: 11 ctggaggcagcggttcatcgatcttttcctg 41
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 gatcgataaacctctgcatccag 109
|||||||||||||||||||||||
Sbjct: 76 gatcgataaacctctgcatccag 98
>48682_llu-miR162:pmrd
Length = 80
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 79 catgaatagatcgataaacctctgcatccag 109
||||||| |||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatccag 80
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
||||| ||||||||| |||||||||||||||
Sbjct: 1 ctggaagcagcggtttatcgatctcttcctg 31
>48834_osa-miR162a:pmrd
Length = 171
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 82 gaatagatcgataaacctctgcatccag 109
|||| |||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48707_mtr-miR162d:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
||||| |||||||||||||||||| ||||||
Sbjct: 1 ctggatgcagcggttcatcgatctgttcctg 31
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 79 catgaatagatcgataaacctctgcatccag 109
||||||| | |||||||||||||||||||||
Sbjct: 57 catgaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 25 ctggaggcagcggttcatcgatctcttcctg 55
||||| |||||||||||||||||| ||||||
Sbjct: 86 ctggatgcagcggttcatcgatctgttcctg 56
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 79 catgaatagatcgataaacctctgcatcca 108
||||||| | ||||||||||||||||||||
Sbjct: 30 catgaatcggtcgataaacctctgcatcca 1
>48685_lsa-miR162:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatccagcg 111
|||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcg 23
>48546_gma-miR162m:pmrd
Length = 367
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatccagcg 111
|||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcg 23
>48705_mtr-miR162b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 26 tggaggcagcggttcatcgatctcttcctg 55
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 79 catgaatagatcgataaacctctgcatcca 108
||||||| | ||||||||||||||||||||
Sbjct: 56 catgaatcggtcgataaacctctgcatcca 85
>54948_zma-miR162b:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatccag 109
|||||||||||||||||||||
Sbjct: 110 tcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tcgataaacctctgcatccag 109
|||||||||||||||||||||
Sbjct: 79 tcgataaacctctgcatccag 99
>48836_osa-miR162m:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 gaatagatcgataaacctctgcatccag 109
|||| ||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 gaatagatcgataaacctctgcatccag 109
|||| ||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 25 ctggaggcagcggttcatcgatct 48
||||||||| ||||||||||||||
Sbjct: 1 ctggaggcatcggttcatcgatct 24
