miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1 gagtgaagtcgctggaggcagcggttcatcgatcaattcctgtgaatatttatttttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gagtgaagtcgctggaggcagcggttcatcgatcaattcctgtgaatatttatttttgtt 54
Query: 61 tacaaaagcaagaatcgatcgataaacctctgcatccagcgctgcttgctc 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tacaaaagcaagaatcgatcgataaacctctgcatccagcgctgcttgctc 3
>46938_ath-miR162b:pmrd
Length = 111
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 gagtgaagtcgctggaggcagcggttcatcgatcaattcctgtgaatatttatttttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtgaagtcgctggaggcagcggttcatcgatcaattcctgtgaatatttatttttgtt 60
Query: 61 tacaaaagcaagaatcgatcgataaacctctgcatccagcgctgcttgctc 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaaaagcaagaatcgatcgataaacctctgcatccagcgctgcttgctc 111
>48545_gma-miR162a:pmrd
Length = 102
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccagcgct 103
||||||||||||||||||||||||||||||||
Sbjct: 66 gaatcgatcgataaacctctgcatccagcgct 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 gtgaagtcgctggaggcagcggttcatcgatc 34
|||||||| ||||| |||||||||||||||||
Sbjct: 1 gtgaagtcactggatgcagcggttcatcgatc 32
>46937_ath-miR162a:pmrd
Length = 140
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 7 agtcgctggaggcagcggttcatcgatcaattcctgtgaa 46
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 20 agtcgctggaggcagcggttcatcgatctcttcctgtgaa 59
>48493_ghr-miR162a:pmrd
Length = 148
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccagcgc 102
|||||||||||||||||||||||||||||||
Sbjct: 87 gaatcgatcgataaacctctgcatccagcgc 117
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 12 ctggaggcagcggttcatcgatcaattcctgtgaat 47
||||||||||||||||||||||| |||||| ||||
Sbjct: 24 ctggaggcagcggttcatcgatctcttcctgagaat 59
>48423_cpa-miR162a:pmrd
Length = 109
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccagcg 101
||||||||||||||||||||||||||||||
Sbjct: 73 gaatcgatcgataaacctctgcatccagcg 102
Score = 52.0 bits (26), Expect = 9e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 6 aagtcgctggaggcagcggttcatcgatcaattcctgtgaat 47
||||| ||||||||||||||||||||||| |||||| ||||
Sbjct: 7 aagtcactggaggcagcggttcatcgatctcttcctgggaat 48
>54784_vvi-miR162:pmrd
Length = 103
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 69 caagaatcgatcgataaacctctgcatccagcg 101
||||||||| |||||||||||||||||||||||
Sbjct: 63 caagaatcggtcgataaacctctgcatccagcg 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 tgaagtcgctggaggcagcggttcatcgatc 34
||||||| ||||| |||||||||||||||||
Sbjct: 1 tgaagtcactggatgcagcggttcatcgatc 31
>54387_rco-miR162:pmrd
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccagc 100
|||||||||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 76 cgatcgataaacctctgcatccagcgct 103
||||||||||||||||||||||||||||
Sbjct: 31 cgatcgataaacctctgcatccagcgct 4
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatc 73
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 76 cgatcgataaacctctgcatccagcgct 103
||||||||||||||||||||||||||||
Sbjct: 31 cgatcgataaacctctgcatccagcgct 4
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 95 ctggaggcagcggttcatcgatc 73
>51616_ptc-miR162a:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 76 cgatcgataaacctctgcatccagcgct 103
||||||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccagcgct 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatc 33
>48834_osa-miR162a:pmrd
Length = 171
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
||||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatccag 163
>48682_llu-miR162:pmrd
Length = 80
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
||||||||||||||||||||||||||||
Sbjct: 53 gaatcgatcgataaacctctgcatccag 80
>48685_lsa-miR162:pmrd
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccagcgct 103
|||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgct 25
>48546_gma-miR162m:pmrd
Length = 367
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tcgataaacctctgcatccagcgct 103
|||||||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatccagcgct 25
>54948_zma-miR162b:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatccag 130
>54542_sly-miR162:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatccag 99
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 76 cgatcgataaacctctgcatccag 99
||||||||||||||||||||||||
Sbjct: 30 cgatcgataaacctctgcatccag 7
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 94 ctggaggcagcggttcatcgatc 72
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 76 cgatcgataaacctctgcatccag 99
||||||||||||||||||||||||
Sbjct: 32 cgatcgataaacctctgcatccag 9
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 96 ctggaggcagcggttcatcgatc 74
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 76 cgatcgataaacctctgcatccag 99
||||||||||||||||||||||||
Sbjct: 32 cgatcgataaacctctgcatccag 9
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 96 ctggaggcagcggttcatcgatc 74
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 76 cgatcgataaacctctgcatccag 99
||||||||||||||||||||||||
Sbjct: 30 cgatcgataaacctctgcatccag 7
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 94 ctggaggcagcggttcatcgatc 72
>51618_ptc-miR162c:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 cgatcgataaacctctgcatccag 99
||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatc 33
>51617_ptc-miR162b:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 cgatcgataaacctctgcatccag 99
||||||||||||||||||||||||
Sbjct: 75 cgatcgataaacctctgcatccag 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctggaggcagcggttcatcgatc 34
|||||||||||||||||||||||
Sbjct: 11 ctggaggcagcggttcatcgatc 33
>48836_osa-miR162m:pmrd
Length = 114
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
|||||||||||||| |||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatccag 114
>48835_osa-miR162b:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
|||||||||||||| |||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatccag 124
>48707_mtr-miR162d:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
|||||| |||||||||||||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccag 87
>48706_mtr-miR162c:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 72 gaatcgatcgataaacctctgcatcca 98
|||||| ||||||||||||||||||||
Sbjct: 27 gaatcggtcgataaacctctgcatcca 1
>48705_mtr-miR162b:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatcca 98
|||||| ||||||||||||||||||||
Sbjct: 59 gaatcggtcgataaacctctgcatcca 85
>48690_mdo-miR162:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 72 gaatcgatcgataaacctctgcatccag 99
|||||| ||||||||||| |||||||||
Sbjct: 61 gaatcggtcgataaacctttgcatccag 88
