miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana (thale
cress)
Length = 169
Score = 226 bits (114), Expect = 7e-59
Identities = 140/153 (91%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatgcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatgcgt 68
Query: 61 gtatatatgcggaattttgtgatatagannnnnnnnnnnnntgagtgtgatgatatggat 120
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 69 gtatatatgcggaattttgtgatatagatgtgtgtgtgcgttgagtgtgatgatatggat 128
Query: 121 gagttagttcttcatgtgcccatcttcaccatc 153
|||||||||||||||||||||||||||||||||
Sbjct: 129 gagttagttcttcatgtgcccatcttcaccatc 161
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 212 bits (107), Expect = 1e-54
Identities = 140/154 (90%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcatatatacactctcaccaca-aatgcg 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9 gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacacaatgcg 68
Query: 60 tgtatatatgcggaattttgtgatatagannnnnnnnnnnnntgagtgtgatgatatgga 119
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 69 tgtatatatgcggaattttgtgatatagatgtgtgtgtgtgttgagtgtgatgatatgga 128
Query: 120 tgagttagttcttcatgtgcccatcttcaccatc 153
||||||||||||||||||||||||||||||||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttcaccatc 162
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 208 bits (105), Expect = 2e-53
Identities = 140/155 (90%), Gaps = 2/155 (1%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatgcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattactagctcatatatacactctcaccacaaatgcgt 68
Query: 61 gtatatatgcggaattttgtgatataga--nnnnnnnnnnnnntgagtgtgatgatatgg 118
|||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 69 gtatatatgcggaattttgtgatatagatgtgtgtgtgtgtgttgagtgtgatgatatgg 128
Query: 119 atgagttagttcttcatgtgcccatcttcaccatc 153
|||||||||||||||||||||||||||||||||||
Sbjct: 129 atgagttagttcttcatgtgcccatcttcaccatc 163
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
|||||||||||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagct 32
||||||||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattactagct 40
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
||||||||||||||||||||||||||||| |||||
Sbjct: 9 gatggagaagcagggcacgtgcattactaactcat 43
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 119 atgagttagttcttcatgtgcccatcttcaccatc 153
||||||||||| ||||||||||||||||| |||||
Sbjct: 104 atgagttagtttttcatgtgcccatcttccccatc 138
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
||||||||||||||||||||||||||||| |||||
Sbjct: 9 gatggagaagcagggcacgtgcattactaactcat 43
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 119 atgagttagttcttcatgtgcccatcttcaccatc 153
||||||||||||||||||||||| ||||| |||||
Sbjct: 73 atgagttagttcttcatgtgcccgtcttccccatc 107
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
||||||||||||||||||||||||||||| |||||
Sbjct: 9 gatggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
||||||||||||||||||||||||||||| |||||
Sbjct: 9 gatggagaagcagggcacgtgcattactaactcat 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 123 gttagttcttcatgtgcccatcttcaccatc 153
||||||||||||||||||| ||||| |||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatc 116
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattact 28
||||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
||||||||||||||||||||||| ||||| |||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattactagctcat 35
||||||||||||||||||||||| ||||| |||||
Sbjct: 9 gatggagaagcagggcacgtgcaatactaactcat 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 120 tgagttagttcttcatgtgcccatcttcaccatc 153
|||||||||||||||||||||| ||||| |||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttccccatc 145
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgcattac 27
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcattac 27
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcattac 27
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcattactag 30
||||||||||||||||||||||| ||||
Sbjct: 11 tggagaagcagggcacgtgcattcctag 38
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 120 tgagttagttcttcatgtgcccatcttcaccatc 153
||||||||| |||||||||||| ||||| |||||
Sbjct: 254 tgagttagtgcttcatgtgcccctcttccccatc 287
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgca 23
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gatggagaagcagggcacgtgc 22
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcat 24
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcat 24
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 tggagaagcagggcacgtgcat 24
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
