miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana (thale
cress)
Length = 102
Score = 202 bits (102), Expect = 6e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 taacacttgatggagaagcagggcacgtgcgaacacaaatgaaatcgatcggtacttgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taacacttgatggagaagcagggcacgtgcgaacacaaatgaaatcgatcggtacttgtt 60
Query: 61 gatcatattttcgcacgtgttctactactccaacacgtgtct 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcatattttcgcacgtgttctactactccaacacgtgtct 102
>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 141 bits (71), Expect = 2e-33
Identities = 92/98 (93%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 3 acacttgatggagaagcagggcacgtgcgaacacaaatgaaatcgatcggtacttgttga 62
||||||| ||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct: 3 acacttgctggagaagcagggcacgtgcgaaca--aatgagatcgatcggtatatgttga 60
Query: 63 tcatattttcgcacgtgttctactactccaacacgtgt 100
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcatattttcgcacgtgttctactactccaacacgtgt 98
>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 91.7 bits (46), Expect = 2e-18
Identities = 85/97 (87%), Gaps = 2/97 (2%)
Strand = Plus / Plus
Query: 4 cacttgatggagaagcagggcacgtgcgaacacaaatgaaatcgatcggtacttgttgat 63
|||||| ||||||||||||||||||||||||| ||||| | || | |||| | |||||
Sbjct: 4 cacttgctggagaagcagggcacgtgcgaaca--aatgagtttgagcagtacattttgat 61
Query: 64 catattttcgcacgtgttctactactccaacacgtgt 100
|| || |||||||||||||||||||||||||||||||
Sbjct: 62 caaatattcgcacgtgttctactactccaacacgtgt 98
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 cttgatggagaagcagggcacgtgc 30
|||||||||||||||||||||||||
Sbjct: 6 cttgatggagaagcagggcacgtgc 30
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgatggagaagcagggcacgtgc 30
|||||||||||||||||||||||
Sbjct: 8 tgatggagaagcagggcacgtgc 30
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 1 gatggagaagcagggcacgtgc 22
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tggagaagcagggcacgtgcga 32
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcga 32
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gatggagaagcagggcacgtgc 30
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
