miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47100_ath-miRf10000-akr:pmrd
Length = 116
Score = 200 bits (101), Expect = 2e-52
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 gttgaggggaatgttgtctggatcgaggatattatagatatatacatgtgtatgttaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gttgaggggaatgttgtctggatcgaggatattatagatatatacatgtgtatgttaatg 55
Query: 61 attcaagtgatcatagagagtatcctcggaccaggcttcat 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 attcaagtgatcatagagagtatcctcggaccaggcttcat 14
>46943_ath-miR165a:pmrd
Length = 111
Score = 200 bits (101), Expect = 2e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgaggatattatagatatatacatgtgtatgttaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggatcgaggatattatagatatatacatgtgtatgttaatg 60
Query: 61 attcaagtgatcatagagagtatcctcggaccaggcttcat 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcaagtgatcatagagagtatcctcggaccaggcttcat 101
>54793_vvi-miR166e:pmrd
Length = 166
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 6 ttgaggggaatgttgtctggctcgagga 33
>54791_vvi-miR166c:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 6 ttgaggggaatgttgtctggctcgagga 33
>54544_sly-miR166b:pmrd
Length = 201
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgagg 28
||||||||||||||||||||| ||||||
Sbjct: 32 gttgaggggaatgttgtctggctcgagg 59
>52289_ptc-miRf10467-akr:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 123 ttgaggggaatgttgtctggctcgagga 96
>52014_ptc-miRf10192-akr:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 1 ttgaggggaatgttgtctggctcgagga 28
>51635_ptc-miR166k:pmrd
Length = 143
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 7 ttgaggggaatgttgtctggctcgagga 34
>51634_ptc-miR166j:pmrd
Length = 143
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 7 ttgaggggaatgttgtctggctcgagga 34
>51627_ptc-miR166c:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 7 ttgaggggaatgttgtctggctcgagga 34
>48548_gma-miR166a:pmrd
Length = 146
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 17 ttgaggggaatgttgtctggctcgagga 44
>48427_cpt-miR166:pmrd
Length = 160
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 6 ttgaggggaatgttgtctggctcgagga 33
>46944_ath-miR165b:pmrd
Length = 182
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgaggatat 32
|||| |||||||||||| ||||||||||||||
Sbjct: 17 gttgtggggaatgttgtttggatcgaggatat 48
>54972_zma-miR166p:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 1 ttgaggggaatgttgtctggctcgagg 27
>54795_vvi-miR166g:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgag 27
||||||||||||||||||||| |||||
Sbjct: 5 gttgaggggaatgttgtctggttcgag 31
>51625_ptc-miR166a:pmrd
Length = 164
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 7 ttgaggggaatgttgtctggctcgagg 33
>48847_osa-miR166d:pmrd
Length = 125
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 15 ttgaggggaatgttgtctggctcgagg 41
>48789_nsy-miR166:pmrd
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgaggggaatgttgtctggatcgagg 28
||||||||||||||||||| ||||||
Sbjct: 1 tgaggggaatgttgtctggctcgagg 26
>54970_zma-miR166n:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 gaggggaatgttgtctggatcgagg 28
|||||||||||||||||| ||||||
Sbjct: 1 gaggggaatgttgtctggctcgagg 25
>51558_pta-miR166a:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcga 26
|||||||||||||||||||| ||||
Sbjct: 5 ttgaggggaatgttgtctggctcga 29
>48846_osa-miR166c:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctgg 21
|||||||||||||||||||||
Sbjct: 5 gttgaggggaatgttgtctgg 25
>54379_pvu-miR166:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgagg 28
|||||| |||||||||||||| ||||||
Sbjct: 4 gttgagaggaatgttgtctggctcgagg 31
>52336_ptc-miRf10514-akr:pmrd
Length = 144
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgagg 28
|||||| |||||||||||||| ||||||
Sbjct: 1 gttgagaggaatgttgtctggctcgagg 28
>51641_ptc-miR166q:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgagg 28
|||||| |||||||||||||| ||||||
Sbjct: 5 gttgagaggaatgttgtctggctcgagg 32
>48845_osa-miR166b:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctgg 21
||||||||||||||||||||
Sbjct: 16 ttgaggggaatgttgtctgg 35
>48714_mtr-miR166d:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 ggggaatgttgtctggatcgagga 29
|||||||||||||||| |||||||
Sbjct: 1 ggggaatgttgtctggctcgagga 24
>48549_gma-miR166b:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgagg 28
|||||| |||||||||||||| ||||||
Sbjct: 16 gttgagaggaatgttgtctggctcgagg 43
>48495_ghr-miR166b:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3 tgaggggaatgttgtctgga 22
||||||||||||||||||||
Sbjct: 1 tgaggggaatgttgtctgga 20
>46949_ath-miR166e:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctgg 21
||||||||||||||||||||
Sbjct: 1 ttgaggggaatgttgtctgg 20
