miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548781.1/288-178 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 200 bits (101), Expect = 3e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgaggatattatagatatatacatgtgtatgttaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggatcgaggatattatagatatatacatgtgtatgttaatg 60
Query: 61 attcaagtgatcatagagagtatcctcggaccaggcttcat 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attcaagtgatcatagagagtatcctcggaccaggcttcat 101
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;EU548800.1/304-159 3702:Arabidopsis thaliana
(thale cress)
Length = 146
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgaggatat 32
|||| |||||||||||| ||||||||||||||
Sbjct: 1 gttgtggggaatgttgtttggatcgaggatat 32
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
trichocarpa
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgagg 28
||||||||||||||||||||| ||||||
Sbjct: 1 gttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagga 29
|||||||||||||||||||| |||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagga 29
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 gttgaggggaatgttgtctggatcgag 27
||||||||||||||||||||| |||||
Sbjct: 1 gttgaggggaatgttgtctggttcgag 27
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 2 ttgaggggaatgttgtctgggtcgagg 28
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 ttgaggggaatgttgtctggatcgagg 28
|||||||||||||||||||| ||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3 tgaggggaatgttgtctggatcgagg 28
||||||||||||||||||| ||||||
Sbjct: 1 tgaggggaatgttgtctggctcgagg 26
