miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46944_ath-miR165b:pmrd
Length = 182
Score = 361 bits (182), Expect = e-100
Identities = 182/182 (100%)
Strand = Plus / Plus
Query: 1 tgaagaggctatttctgttgtggggaatgttgtttggatcgaggatatcataaacgcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaagaggctatttctgttgtggggaatgttgtttggatcgaggatatcataaacgcata 60
Query: 61 cacatgtttatatgttatgatgcattatatgactgatgtaatgtacatatatatacatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cacatgtttatatgttatgatgcattatatgactgatgtaatgtacatatatatacatac 120
Query: 121 atgccacatggtatcgtcggaccaggcttcatccccctcaacatgttaattgccttcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgccacatggtatcgtcggaccaggcttcatccccctcaacatgttaattgccttcaat 180
Query: 181 ca 182
||
Sbjct: 181 ca 182
>47100_ath-miRf10000-akr:pmrd
Length = 116
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 131 gtatcgtcggaccaggcttcatccccctcaacatg 165
||||| ||||||||||||||||||||| |||||||
Sbjct: 35 gtatcctcggaccaggcttcatcccccccaacatg 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 17 gttgtggggaatgttgtttggatcgaggatat 48
|||| |||||||||||| ||||||||||||||
Sbjct: 114 gttgaggggaatgttgtctggatcgaggatat 83
>48644_hce-miR165:pmrd
Length = 165
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||||||||
Sbjct: 142 tcgtcggaccaggcttcatccccc 165
>46943_ath-miR165a:pmrd
Length = 111
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gttgtggggaatgttgtttggatcgaggatat 48
|||| |||||||||||| ||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggatcgaggatat 32
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 131 gtatcgtcggaccaggcttcatccccctcaac 162
||||| ||||||||||||||||||||| ||||
Sbjct: 80 gtatcctcggaccaggcttcatcccccccaac 111
>46870_aqc-miR166e:pmrd
Length = 147
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccctcaa 161
||||||||||||||||||| ||||||||
Sbjct: 118 tcgtcggaccaggcttcattcccctcaa 145
>54794_vvi-miR166f:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaaca 163
|||||||||||||||| ||||||||||
Sbjct: 69 tcggaccaggcttcattcccctcaaca 95
>48849_osa-miR166f:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaaca 163
|||||||||||||||| ||||||||||
Sbjct: 72 tcggaccaggcttcattcccctcaaca 98
>48344_bna-miR166c:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctcaac 162
||||||||||||||||| |||||||||
Sbjct: 92 gtcggaccaggcttcattcccctcaac 118
>48343_bna-miR166b:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctcaac 162
||||||||||||||||| |||||||||
Sbjct: 90 gtcggaccaggcttcattcccctcaac 116
>46950_ath-miR166f:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctcaac 162
||||||||||||||||| |||||||||
Sbjct: 77 gtcggaccaggcttcattcccctcaac 103
>46949_ath-miR166e:pmrd
Length = 143
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 cgtcggaccaggcttcatccccctcaa 161
|||||||||||||||||| ||||||||
Sbjct: 117 cgtcggaccaggcttcattcccctcaa 143
>54795_vvi-miR166g:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 69 tcggaccaggcttcattcccctcaac 94
>54543_sly-miR166a:pmrd
Length = 111
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 86 tcggaccaggcttcattcccctcaac 111
>51628_ptc-miR166d:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 76 tcggaccaggcttcattcccctcaac 101
>48481_flm-miR166:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
||||||||||||||||||||| ||||
Sbjct: 83 tcggaccaggcttcatcccccccaac 108
>46951_ath-miR166g:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 85 tcggaccaggcttcattcccctcaac 110
>54972_zma-miR166p:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaa 161
|||||||||||||||| ||||||||
Sbjct: 71 tcggaccaggcttcattcccctcaa 95
>54793_vvi-miR166e:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 129 tggtatcgtcggaccaggcttcatccccc 157
|||| ||||||||||||||||||| ||||
Sbjct: 127 tggtgtcgtcggaccaggcttcattcccc 155
>54792_vvi-miR166d:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaa 161
|||||||||||||||| ||||||||
Sbjct: 129 tcggaccaggcttcattcccctcaa 153
>54791_vvi-miR166c:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 129 tggtatcgtcggaccaggcttcatccccc 157
|||| ||||||||||||||||||| ||||
Sbjct: 121 tggtgtcgtcggaccaggcttcattcccc 149
>54578_smo-miR166c:pmrd
Length = 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctca 160
||||||||||||||||| |||||||
Sbjct: 106 gtcggaccaggcttcattcccctca 130
>51636_ptc-miR166l:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaa 161
|||||||||||||||| ||||||||
Sbjct: 68 tcggaccaggcttcattcccctcaa 92
>51633_ptc-miR166i:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaa 161
|||||||||||||||| ||||||||
Sbjct: 74 tcggaccaggcttcattcccctcaa 98
>51630_ptc-miR166f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaa 161
|||||||||||||||| ||||||||
Sbjct: 76 tcggaccaggcttcattcccctcaa 100
>51559_pta-miR166b:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctca 160
||||||||||||||||| |||||||
Sbjct: 89 gtcggaccaggcttcattcccctca 113
>48847_osa-miR166d:pmrd
Length = 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaa 161
|||||||||||||||| ||||||||
Sbjct: 91 tcggaccaggcttcattcccctcaa 115
>54577_smo-miR166b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 99 tcggaccaggcttcattcccctca 122
>54576_smo-miR166a:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 108 tcggaccaggcttcattcccctca 131
>54425_sbi-miR166j:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 85 tcggaccaggcttcattcccctca 108
>52289_ptc-miRf10467-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 28 tcgtcggaccaggcttcattcccc 5
>51637_ptc-miR166m:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 76 tcggaccaggcttcattcccctca 99
>51627_ptc-miR166c:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 102 tcgtcggaccaggcttcattcccc 125
>51374_ppt-miR166g:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 96 tcggaccaggcttcattcccctca 119
>51373_ppt-miR166f:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 74 tcggaccaggcttcattcccctca 97
>51372_ppt-miR166e:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 96 tcggaccaggcttcattcccctca 119
>51369_ppt-miR166b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 74 tcggaccaggcttcattcccctca 97
>51368_ppt-miR166a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 74 tcggaccaggcttcattcccctca 97
>48844_osa-miR166a:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 110 tcggaccaggcttcattcccctca 133
>48550_gma-miR166n:pmrd
Length = 409
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctca 160
|||||||||||||||| |||||||
Sbjct: 1 tcggaccaggcttcattcccctca 24
>48495_ghr-miR166b:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 127 tcgtcggaccaggcttcattcccc 150
>48494_ghr-miR166a:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 124 tcgtcggaccaggcttcattcccc 147
>48427_cpt-miR166:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 126 tcgtcggaccaggcttcattcccc 149
>48342_bna-miR166a:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 108 tcgtcggaccaggcttcattcccc 131
>46946_ath-miR166b:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 134 tcgtcggaccaggcttcatccccc 157
||||||||||||||||||| ||||
Sbjct: 93 tcgtcggaccaggcttcattcccc 116
