miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548800.1/304-159 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 289 bits (146), Expect = 7e-78
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 17 gttgtggggaatgttgtttggatcgaggatatcataaacgcatacacatgtttatatgtt 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttgtggggaatgttgtttggatcgaggatatcataaacgcatacacatgtttatatgtt 60
Query: 77 atgatgcattatatgactgatgtaatgtacatatatatacatacatgccacatggtatcg 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgatgcattatatgactgatgtaatgtacatatatatacatacatgccacatggtatcg 120
Query: 137 tcggaccaggcttcatccccctcaac 162
||||||||||||||||||||||||||
Sbjct: 121 tcggaccaggcttcatccccctcaac 146
>RF00075;mir-166;EU548781.1/288-178 3702:Arabidopsis thaliana
(thale cress)
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 17 gttgtggggaatgttgtttggatcgaggatat 48
|||| |||||||||||| ||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggatcgaggatat 32
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 131 gtatcgtcggaccaggcttcatccccctcaac 162
||||| ||||||||||||||||||||| ||||
Sbjct: 80 gtatcctcggaccaggcttcatcccccccaac 111
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 cgtcggaccaggcttcatccccctcaa 161
|||||||||||||||||| ||||||||
Sbjct: 95 cgtcggaccaggcttcattcccctcaa 121
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctcaac 162
||||||||||||||||| |||||||||
Sbjct: 83 gtcggaccaggcttcattcccctcaac 109
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctcaac 162
||||||||||||||||| |||||||||
Sbjct: 72 gtcggaccaggcttcattcccctcaac 98
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 135 cgtcggaccaggcttcatccccctcaa 161
|||||||||||||||||| ||||||||
Sbjct: 118 cgtcggaccaggcttcattcccctcaa 144
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 136 gtcggaccaggcttcatccccctcaac 162
||||||||||||||||| |||||||||
Sbjct: 75 gtcggaccaggcttcattcccctcaac 101
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 100 tcggaccaggcttcattcccctcaac 125
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 75 tcggaccaggcttcattcccctcaac 100
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 71 tcggaccaggcttcattcccctcaac 96
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 65 tcggaccaggcttcattcccctcaac 90
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 132 tcggaccaggcttcattcccctcaac 157
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 65 tcggaccaggcttcattcccctcaac 90
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 94 tcggaccaggcttcattcccctcaac 119
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 73 tcggaccaggcttcattcccctcaac 98
>RF00075;mir-166;AJ872261.1/164-57 311981:Festuca glaucescens x
Lolium multiflorum
Length = 108
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
||||||||||||||||||||| ||||
Sbjct: 83 tcggaccaggcttcatcccccccaac 108
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 62 tcggaccaggcttcattcccctcaac 87
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 137 tcggaccaggcttcatccccctcaac 162
|||||||||||||||| |||||||||
Sbjct: 62 tcggaccaggcttcattcccctcaac 87
