miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 238 bits (120), Expect = 1e-62
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggactcttattctaatacaatctcatttgaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttgaggggactgttgtctggctcgaggactcttattctaatacaatctcatttgaataca 61
Query: 61 ttcagatctgatgattgattagggttttagtgtcgtcggaccaggcttcattccccccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ttcagatctgatgattgattagggttttagtgtcgtcggaccaggcttcattccccccaa 121
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 75 ttgattagggttttagtgtcgtcggaccaggcttcattccccccaa 120
|||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 100 ttgattagggttttagcgtcttcggaccaggcttcattccccccaa 145
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggactct 32
||||||||||||||||||||||||||||||||
Sbjct: 2 ttgaggggactgttgtctggctcgaggactct 33
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 87 ttagtgtcgtcggaccaggcttcattccccccaa 120
||||||||||||||||||||||||||||||||||
Sbjct: 102 ttagtgtcgtcggaccaggcttcattccccccaa 135
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggac 29
||||||||| |||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggac 30
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 89 agtgtcgtcggaccaggcttcattccccccaa 120
||||||||||||||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattccccccaa 132
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggactct 32
||||||||| ||||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggactct 33
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 gtgtcgtcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||||||||
Sbjct: 125 gtgtcgtcggaccaggcttcattccccccaa 155
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggac 29
||||||||| |||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggac 30
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 90 gtgtcgtcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||||||||
Sbjct: 119 gtgtcgtcggaccaggcttcattccccccaa 149
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggactctta 34
||||||||| ||||||||||||||||||| ||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggacactta 35
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 87 ttagtgtcgtcggaccaggcttcattccccccaa 120
|||| |||||||||||||||||||||||||||||
Sbjct: 91 ttagggtcgtcggaccaggcttcattccccccaa 124
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggactctt 33
||||||||| |||||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggactctt 34
>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
(castor bean)
Length = 121
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 87 ttagtgtcgtcggaccaggcttcattccccccaa 120
|||||| |||||||||||||||||||||||||||
Sbjct: 87 ttagtgacgtcggaccaggcttcattccccccaa 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 87 ttagtgtcgtcggaccaggcttcattccccccaa 120
||||||| ||||||||||||||||||||||||||
Sbjct: 114 ttagtgttgtcggaccaggcttcattccccccaa 147
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
tobacco)
Length = 185
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 87 ttagtgtcgtcggaccaggcttcattcccccca 119
||||||| |||||||||||||||||||||||||
Sbjct: 153 ttagtgttgtcggaccaggcttcattcccccca 185
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgaggggactgttgtctggctcgagg 27
|||||||| |||||||||||||||||
Sbjct: 1 tgaggggaatgttgtctggctcgagg 26
>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
Length = 113
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 89 agtgtcgtcggaccaggcttcattccccccaa 120
||||| ||||||||||||||||||||||||||
Sbjct: 81 agtgttgtcggaccaggcttcattccccccaa 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggac 29
||||||||| |||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggac 30
>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
trichocarpa
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggact 30
||||||||| ||||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggact 31
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 gtcggaccaggcttcattccccccaa 120
||||||||||||||||||||||||||
Sbjct: 108 gtcggaccaggcttcattccccccaa 133
>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
trichocarpa
Length = 155
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 gtcggaccaggcttcattccccccaa 120
||||||||||||||||||||||||||
Sbjct: 129 gtcggaccaggcttcattccccccaa 154
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;EU548871.1/183-293 3702:Arabidopsis thaliana (thale
cress)
Length = 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 86 tcggaccaggcttcattccccccaa 110
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattccccccaa 93
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccccccaa 91
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 72 tcggaccaggcttcattccccccaa 96
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 69 tcggaccaggcttcattccccccaa 93
>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
(barrel medic)
Length = 107
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgaggac 29
||||||||| |||||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgaggac 30
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 82 tcggaccaggcttcattccccccaa 106
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 65 tcggaccaggcttcattccccccaa 89
>RF00075;mir-166;AY664413.1/238586-238494 4577:Zea mays
Length = 93
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 68 tcggaccaggcttcattccccccaa 92
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 79 tcggaccaggcttcattccccccaa 103
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 166 tcggaccaggcttcattccccccaa 190
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 135 tcggaccaggcttcattccccccaa 159
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 155 tcggaccaggcttcattccccccaa 179
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 154 tcggaccaggcttcattccccccaa 178
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccccaa 120
|||||||||||||||||||||||||
Sbjct: 87 tcggaccaggcttcattccccccaa 111
>RF00075;mir-166;ABIM01027778.1/13122-13246 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattcccccca 119
||||||||||||||||||||||||
Sbjct: 100 tcggaccaggcttcattcccccca 123
>RF00075;mir-166;AC189313.2/128870-128784 51351:Brassica rapa subsp.
pekinensis
Length = 87
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattcccccca 119
||||||||||||||||||||||||
Sbjct: 62 tcggaccaggcttcattcccccca 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 tgaggggactgttgtctggctcgagg 27
|||| |||||||||||||||||||||
Sbjct: 3 tgagaggactgttgtctggctcgagg 28
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattcccccca 119
||||||||||||||||||||||||
Sbjct: 79 tcggaccaggcttcattcccccca 102
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattcccccca 119
||||||||||||||||||||||||
Sbjct: 189 tcggaccaggcttcattcccccca 212
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 cgtcggaccaggcttcattcccc 116
|||||||||||||||||||||||
Sbjct: 95 cgtcggaccaggcttcattcccc 117
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 cgtcggaccaggcttcattcccc 116
|||||||||||||||||||||||
Sbjct: 118 cgtcggaccaggcttcattcccc 140
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggattgttgtctggctcgagg 28
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 ttagtgtcgtcggaccaggcttcattcccc 116
|||||| | |||||||||||||||||||||
Sbjct: 116 ttagtgccctcggaccaggcttcattcccc 145
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 ttgaggggactgttgtctggctcgagg 27
||||||||| |||||||||||||||||
Sbjct: 2 ttgaggggaatgttgtctggctcgagg 28
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gtcggaccaggcttcattcccc 116
||||||||||||||||||||||
Sbjct: 83 gtcggaccaggcttcattcccc 104
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gtcggaccaggcttcattcccc 116
||||||||||||||||||||||
Sbjct: 72 gtcggaccaggcttcattcccc 93
>RF00075;mir-166;AL590346.1/40100-40217 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccc 117
||||||||||||||||||||||
Sbjct: 93 tcggaccaggcttcattccccc 114
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 gtcggaccaggcttcattcccc 116
||||||||||||||||||||||
Sbjct: 75 gtcggaccaggcttcattcccc 96
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 tgtcgtcggaccaggcttcattcccc 116
|||| |||||||||||||||||||||
Sbjct: 58 tgtcctcggaccaggcttcattcccc 83
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 tgtcgtcggaccaggcttcattcccc 116
|||| |||||||||||||||||||||
Sbjct: 64 tgtcctcggaccaggcttcattcccc 89
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccc 117
||||||||||||||||||||||
Sbjct: 67 tcggaccaggcttcattccccc 88
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tcggaccaggcttcattccccc 117
||||||||||||||||||||||
Sbjct: 80 tcggaccaggcttcattccccc 101
