miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46954_ath-miR167c:pmrd
Length = 160
Score = 228 bits (115), Expect = 1e-60
Identities = 145/160 (90%)
Strand = Plus / Plus
Query: 1 ccagtagcagttaagctgccagcatgatcttgtcttcctctcttaggtttcatatatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagtagcagttaagctgccagcatgatcttgtcttcctctcttaggtttcatatatagt 60
Query: 61 taataaatattttatatatttcttgttcttacaagattatatgatcatagcttnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taataaatattttatatatttcttgttcttacaagattatatgatcatagcttagagaga 120
Query: 121 nnnnnnnnctaggtcatgctggtagtttcacctgctaatg 160
||||||||||||||||||||||||||||||||
Sbjct: 121 gagagagactaggtcatgctggtagtttcacctgctaatg 160
>48147_ath-miRf11047-akr:pmrd
Length = 136
Score = 200 bits (101), Expect = 2e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 13 aagctgccagcatgatcttgtcttcctctcttaggtttcatatatagttaataaatattt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctgccagcatgatcttgtcttcctctcttaggtttcatatatagttaataaatattt 60
Query: 73 tatatatttcttgttcttacaagattatatgatcatagctt 113
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatatatttcttgttcttacaagattatatgatcatagctt 101
>54799_vvi-miR167c:pmrd
Length = 91
Score = 44.1 bits (22), Expect = 3e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 2 cagtagcagtt-aagctgccagcatgatct 30
||||||||||| ||||||||||||||||||
Sbjct: 1 cagtagcagttgaagctgccagcatgatct 30
