miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU549004.1/261-98 3702:Arabidopsis thaliana (thale
cress)
Length = 164
Score = 220 bits (111), Expect = 4e-57
Identities = 144/160 (90%)
Strand = Plus / Plus
Query: 1 ccagtagcagttaagctgccagcatgatcttgtcttcctctcttaggtttcatatatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 ccagtagcagttaagctgccagcatgatcttgtcttcctctcttaggtttcatatatagt 62
Query: 61 taataaatattttatatatttcttgttcttacaagattatatgatcatagcttnnnnnnn 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 63 taataaatattttatatatttcttgttcttataagattatatgatcatagcttagagaga 122
Query: 121 nnnnnnnnctaggtcatgctggtagtttcacctgctaatg 160
||||||||||||||||||||||||||||||||
Sbjct: 123 gagagagactaggtcatgctggtagtttcacctgctaatg 162
>RF00640;MIR167_1;EU549001.1/260-98 3702:Arabidopsis thaliana (thale
cress)
Length = 163
Score = 212 bits (107), Expect = 1e-54
Identities = 144/160 (90%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 1 ccagtagcagttaagctgccagcatgatcttgtcttcctctcttaggtttcatatatagt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3 ccagtagcagttaagctgccagcatgatcttgtcttcctct-ttaggtttcatatatagt 61
Query: 61 taataaatattttatatatttcttgttcttacaagattatatgatcatagcttnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 taataaatattttatatatttcttgttcttacaagattatatgatcatagcttagagaga 121
Query: 121 nnnnnnnnctaggtcatgctggtagtttcacctgctaatg 160
||||||||||||||||||||||||||||||||
Sbjct: 122 gagagagactaggtcatgctggtagtttcacctgctaatg 161
>RF00640;MIR167_1;EU548995.1/260-98 3702:Arabidopsis thaliana (thale
cress)
Length = 163
Score = 192 bits (97), Expect = 1e-48
Identities = 110/113 (97%), Gaps = 1/113 (0%)
Strand = Plus / Plus
Query: 1 ccagtagcagttaagctgccagcatgatcttgtcttcctctcttaggttt-catatatag 59
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 3 ccagtagcagttaagctgccagcatgatcttgtcttcctcccttaggttttcatatatag 62
Query: 60 ttaataaatattttatatatttcttgttcttacaagattatatgatcatagct 112
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ttgataaatattttatatatttcttgttcttacaagattatatgatcatagct 115
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 1 ccagtagcagtt-aagctgccagcatgatct 30
|||||||||||| ||||||||||||||||||
Sbjct: 3 ccagtagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 1 ccagtagcagtt-aagctgccagcatgatct 30
|||||||||||| ||||||||||||||||||
Sbjct: 3 ccagtagcagttgaagctgccagcatgatct 33
