miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46957_ath-miR168a:pmrd
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
Query: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
Query: 121 aatcggatcctcgaggtg 138
||||||||||||||||||
Sbjct: 121 aatcggatcctcgaggtg 138
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 256 bits (129), Expect = 4e-69
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 6 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 60
Query: 66 ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 120
Query: 126 gatcctcga 134
|||||||||
Sbjct: 121 gatcctcga 129
>46959_ath-miR168m:pmrd
Length = 104
Score = 206 bits (104), Expect = 3e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 60
Query: 78 attggtttgtgagcagggattggatcccgccttgcatcaactga 121
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attggtttgtgagcagggattggatcccgccttgcatcaactga 104
>48349_bna-miR168:pmrd
Length = 133
Score = 67.9 bits (34), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 5/107 (4%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaaaccttt 77
|||||||||||||||||||||| ||| ||||||||| ||| |||| |||| || |
Sbjct: 18 tcgcttggtgcaggtcgggaactgatt-ggctgacaccgccacgtggcttt----ccatg 72
Query: 78 attggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124
|||| |||||||||||||| ||||||||||||| ||||| ||||||
Sbjct: 73 gttggcttgtgagcagggatcggatcccgccttgtatcaagtgaatc 119
>51651_ptc-miR168b:pmrd
Length = 136
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 103 attggatcccgccttgcatcaactgaatcgga 134
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaaccaattcggc 48
|||||||||||||||||||||||| |||||||
Sbjct: 9 attcgcttggtgcaggtcgggaactgattcggc 41
>51650_ptc-miR168a:pmrd
Length = 160
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 127 attggatcccgccttgcatcaactgaatcgga 158
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48
||||||||||||||||||||||||| |||||||
Sbjct: 8 gattcgcttggtgcaggtcgggaactgattcggc 41
>48560_gma-miR168:pmrd
Length = 125
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 81 attggatcccgccttgcatcaactgaatcgga 112
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaacc 40
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>54388_rco-miR168:pmrd
Length = 156
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcg 125
||||||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>46958_ath-miR168b:pmrd
Length = 124
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 ctcggattcgcttggtgcaggtcgggaac 39
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>54802_vvi-miR168:pmrd
Length = 132
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 100 gatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||
Sbjct: 99 gatcccgccttgcatcaactgaatcgga 126
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaacc 40
|||||||||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcgggaacc 33
>54375_pts-miR168b:pmrd
Length = 140
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactga 121
||||||||||||||||||||||||||
Sbjct: 115 attggatcccgccttgcatcaactga 140
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaaccaattcggc 48
|||||||||||||||||||||| |||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgattcggc 31
>54374_pts-miR168a:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactga 121
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>54366_ptr-miR168:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactga 121
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>55000_zma-miR168b:pmrd
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||| |||||||||
Sbjct: 63 ggatcccgccttgcatcaagtgaatcgga 91
>48649_hte-miR168:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>54999_zma-miR168a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||| ||| |||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcgga 91
>54665_stu-miR168:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 97 ttggatcccgccttgcatcaactga 121
|||| ||||||||||||||||||||
Sbjct: 109 ttgggtcccgccttgcatcaactga 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcggga 37
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54637_sof-miR168b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||| ||| |||||||||
Sbjct: 62 ggatcccgccttgcaccaagtgaatcgga 90
>54636_sof-miR168a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||| ||| |||||||||
Sbjct: 63 ggatcccgccttgcaccaagtgaatcgga 91
>48873_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||| ||| |||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcgga 83
>48872_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||| ||| |||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcgga 83
>48871_osa-miR168a:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 99 ggatcccgccttgcatcaactgaatcgga 127
||||||||||||||| ||| |||||||||
Sbjct: 55 ggatcccgccttgcaccaagtgaatcgga 83
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 18 tcgcttggtgcaggtcggga 37
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
