miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 274 bits (138), Expect = 3e-73
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 61
Query: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 121
Query: 121 aatcggatcctcgaggtg 138
||||||||||||||||||
Sbjct: 122 aatcggatcctcgaggtg 139
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 157 bits (79), Expect = 5e-38
Identities = 121/133 (90%), Gaps = 4/133 (3%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
|||| |||||||||||||||||||||||||||||||||| |||| | ||||||| ||| |
Sbjct: 2 caccgtcgggctcggattcgcttggtgcaggtcgggaactaatttg-ctgacacggccac 60
Query: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
|||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgagtttt---cctttgttggtttgtgagcagggattggatcccgccttgcatcaactg 117
Query: 121 aatcggatcctcg 133
||||||| |||||
Sbjct: 118 aatcggagcctcg 130
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 153 bits (77), Expect = 7e-37
Identities = 126/139 (90%), Gaps = 5/139 (3%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
|||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct: 2 caccgtcgggctcggattcgcttggtgcaggtcgggaaccaact-ggctgacacagccac 60
Query: 61 gtgacttttaaacctttattggtttgtgagc-agggattggatcccgccttgcatcaact 119
||||||| || | || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61 gtgacttgta---ccttgttggtttgtgagccagggattggatcccgccttgcatcaact 117
Query: 120 gaatcggatcctcgaggtg 138
|||||||| || |||||||
Sbjct: 118 gaatcggagccccgaggtg 136
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 127 bits (64), Expect = 4e-29
Identities = 106/118 (89%), Gaps = 4/118 (3%)
Strand = Plus / Plus
Query: 12 tcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgacttttaa 71
|||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| |
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaatt-ggctgacacagccacgtgactt---a 68
Query: 72 acctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcggatc 129
| | | ||||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 69 atcctcattggcttgtgaccaggaattggatcccgccttgcatcaactgaatcggatc 126
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 117 bits (59), Expect = 4e-26
Identities = 113/128 (88%), Gaps = 6/128 (4%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgac-acagcct 59
|||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct: 2 caccgtcgggctcggattcgcttggtgcaggtcgggaactgatt-ggctggttacagcca 60
Query: 60 cgtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaact 119
|||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 cgtggcgttt----ctttattggtttgtgagcagtgattggatcccgccttgcatcaact 116
Query: 120 gaatcgga 127
||||||||
Sbjct: 117 gaatcgga 124
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 117 bits (59), Expect = 4e-26
Identities = 112/127 (88%), Gaps = 7/127 (5%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctc 60
|||| |||||||||||||||||||||||||||||||| | | || |||||||||||| |
Sbjct: 2 caccgtcgggctcggattcgcttggtgcaggtcggga--ctaatccgctgacacagccac 59
Query: 61 gtgacttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactg 120
||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 60 gtgtctttta----cttattgg-ttgtgagcagggattggctcccgccttgcatcaactg 114
Query: 121 aatcgga 127
|||||||
Sbjct: 115 aatcgga 121
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 97.6 bits (49), Expect = 4e-20
Identities = 103/118 (87%), Gaps = 6/118 (5%)
Strand = Plus / Plus
Query: 10 gctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgactttt 69
||||||||||||||||||||||||||||||||||| | |||||||| || || | ||||
Sbjct: 11 gctcggattcgcttggtgcaggtcgggaaccaatt-gtctgacacatccacga-agtttt 68
Query: 70 aaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 127
| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 69 ac----ttgctggtttgtgagcagggattggatcccgccttgcatcaaatgaatcgga 122
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 89.7 bits (45), Expect = 9e-18
Identities = 104/122 (85%), Gaps = 5/122 (4%)
Strand = Plus / Plus
Query: 6 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgacacagcctcgtgac 65
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaactgatt-ggctgacacagccacgtgga 65
Query: 66 ttttaaacctttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcg 125
|| || | ||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct: 66 tt----cccatcattggcatgtgagcagggatctgctcccgccttgcatcaactgaatcg 121
Query: 126 ga 127
||
Sbjct: 122 ga 123
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 85.7 bits (43), Expect = 1e-16
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 6 tcgggctcggattcgcttggtgcaggtcgggaaccaattcggctgac 52
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7 tcgggctcggattcgcttggtgcaggtcgggaaccaatttggctgac 53
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcgga 63
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcgga 166
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 15 gattcgcttggtgcaggtcgggaaccaattcggc 48
||||||||||||||||||||||||| |||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaactgattcggc 49
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcgga 142
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaaccaattcggc 48
|||||||||||||||||||||||| |||||||
Sbjct: 17 attcgcttggtgcaggtcgggaactgattcggc 49
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcgga 108
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaacca 41
||||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 caccatcgggctcggattcgcttggtgcaggtcgggaac 39
|||| ||| ||||||||||||||||||||||||||||||
Sbjct: 2 caccgtcgagctcggattcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 102 tcccgccttgcatcaactgaatcgga 127
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;AM900012.1/30-111 264416:Diplotaxis tenuifolia
Length = 82
Score = 60.0 bits (30), Expect = 8e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 79 ttggtttgtgagcagggattggatcccgccttgcatcaactgaatc 124
|||| |||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 21 ttggcttgtgagcagggatcggatcctgccttccatcaactgaatc 66
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 60.0 bits (30), Expect = 8e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 78 attggtttgtgagcagggattggatcccgccttgcatcaactgaatcgga 127
||||| |||||| | | ||| |||||||||||||||||||||||||||||
Sbjct: 74 attggcttgtgaccggcgatcggatcccgccttgcatcaactgaatcgga 123
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 ctcggattcgcttggtgcaggtcgggaac 39
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 96 attggatcccgccttgcatcaactgaatcg 125
||||||||||||||||||||||||||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 ctcggattcgcttggtgcaggtcgggaac 39
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 tcggattcgcttggtgcaggtcgggaac 39
||||||||||||||||||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gccttgcatcaactgaatcgga 127
||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcgga 113
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 100 gatcccgccttgcatcaactgaatcgga 127
||||||||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactgaatcgga 134
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 attcgcttggtgcaggtcgggaacc 40
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 gattcgcttggtgcaggtcgggaacca 41
|||||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaacca 42
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 gattcgcttggtgcaggtcgggaac 39
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 gattcgcttggtgcaggtcgggaac 39
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tcccgccttgcatcaactgaatc 124
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 gattcgcttggtgcaggtcgggaac 39
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 100 gatcccgccttgcatcaactgaatc 124
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
