miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46958_ath-miR168b:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
Query: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
Query: 121 gtga 124
||||
Sbjct: 121 gtga 124
>48349_bna-miR168:pmrd
Length = 133
Score = 101 bits (51), Expect = 1e-22
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 5 cggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtgt 64
|||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 cggcggcctctgactcgcttggtgcaggtcgggaactgattggctgacaccgccacgtgg 63
Query: 65 cttgtcatggttggtttgtgagc 87
||| ||||||||| ||||||||
Sbjct: 64 ctttccatggttggcttgtgagc 86
>54388_rco-miR168:pmrd
Length = 156
Score = 81.8 bits (41), Expect = 1e-16
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
>51650_ptc-miR168a:pmrd
Length = 160
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 9 ggtctcggattcgcttggtgcaggtcgggaactgatt 45
|||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ggtctctgattcgcttggtgcaggtcgggaactgatt 37
>51651_ptc-miR168b:pmrd
Length = 136
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcgggaactgatt 37
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaac 40
|||||||||||||||||||||||||||||
Sbjct: 6 ctcggattcgcttggtgcaggtcgggaac 34
>46957_ath-miR168a:pmrd
Length = 138
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaac 40
|||||||||||||||||||||||||||||
Sbjct: 11 ctcggattcgcttggtgcaggtcgggaac 39
>54375_pts-miR168b:pmrd
Length = 140
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54374_pts-miR168a:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>54366_ptr-miR168:pmrd
Length = 118
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcgggaactgatt 45
|||||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactgatt 27
>48560_gma-miR168:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
Score = 42.1 bits (21), Expect = 1e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 88 tcccgtcttgtatcaactgaatcggagtccgaggtga 124
||||| |||| |||||||||||||||| ||| |||||
Sbjct: 87 tcccgccttgcatcaactgaatcggaggccgcggtga 123
>54802_vvi-miR168:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 9 attcgcttggtgcaggtcgggaac 32
>48649_hte-miR168:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcgggaactg 42
||||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaactg 24
>46959_ath-miR168m:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcgggaac 22
>54665_stu-miR168:pmrd
Length = 133
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcggga 38
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
>54546_sly-miR168:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 tcgcttggtgcaggtcggga 38
||||||||||||||||||||
Sbjct: 1 tcgcttggtgcaggtcggga 20
