miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 246 bits (124), Expect = 6e-65
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
Query: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
Query: 121 gtga 124
||||
Sbjct: 121 gtga 124
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 174 bits (88), Expect = 2e-43
Identities = 115/124 (92%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1 ttaccggcggtttcggattcgcttggtgcaggtcgggaactgattggctgactccgacat 60
Query: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
||| ||||||||||||| ||||||||||| | |||| ||||||||||||||||||||||
Sbjct: 61 atgttttgtcatggttggcttgtgagctcctgccttgcatcaactgaatcggagtccgag 120
Query: 121 gtga 124
||||
Sbjct: 121 gtga 124
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 159 bits (80), Expect = 1e-38
Identities = 113/124 (91%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
|||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 1 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgattggctaataccaccac 60
Query: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
|||||||||||||||||| |||| |||||||| |||| |||||||||||| ||||| |||
Sbjct: 61 gtgtcttgtcatggttggcttgtaagctcccgccttgcatcaactgaatctgagtcggag 120
Query: 121 gtga 124
||||
Sbjct: 121 gtga 124
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 143 bits (72), Expect = 6e-34
Identities = 111/124 (89%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1 ttaccggcggtctcagattcgcttggtgcaggtcgggaactgattggctgataccaccac 60
Query: 61 gtgtcttgtcatggttggtttgtgagctcccgtcttgtatcaactgaatcggagtccgag 120
||||||||| ||||||| ||||||| |||| |||| ||||| |||||| |||||||||
Sbjct: 61 gtgtcttgtaatggttgtcttgtgagttcccagcttgcatcaagtgaatcagagtccgag 120
Query: 121 gtga 124
||||
Sbjct: 121 gtga 124
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 113 bits (57), Expect = 6e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacac 60
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattgactgtcaccgccac 60
Query: 61 gtgtcttgtcatggttggtttgtga 85
|||| || ||||| |||| ||||||
Sbjct: 61 gtgttttctcatgattggcttgtga 85
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 87.7 bits (44), Expect = 3e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtg 63
||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgattggctgacacagccacgtg 63
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 81.8 bits (41), Expect = 2e-15
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctgattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 81.8 bits (41), Expect = 2e-15
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgattggct 49
|||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgattggct 49
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 79.8 bits (40), Expect = 8e-15
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattggctg 50
|||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcgggaactgattggctg 50
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 13 tcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgtg 63
||||||||||||||||||||||||||||| |||||||||||| | ||||||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaattggctgacacagccacgtg 63
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 75.8 bits (38), Expect = 1e-13
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgt 62
|||| ||| ||||||||||||||||||||||||||||| | |||||||||| | |||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccacgt 62
Query: 63 gtcttgt-catggttggtttgtgagc 87
| ||||| | | ||||||||||||||
Sbjct: 63 gacttgtaccttgttggtttgtgagc 88
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 73.8 bits (37), Expect = 5e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgt 62
|||| ||| |||||||||||||||||||||||||||||| ||| |||||||| | |||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcgggaactaatttgctgacacggccacgt 62
Query: 63 g 63
|
Sbjct: 63 g 63
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 1 ttaccggcggtctcggattcgcttggtgcaggtcgggaactgatt 45
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ttaccggcggtctctaattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaactgatt 45
||||||||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 9 ggtctcggattcgcttggtgcaggtcgggaactgatt 45
|||||| ||||||||||||||||||||||||||||||
Sbjct: 9 ggtctcagattcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaactgattggctgacac 54
||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaaccaattgtctgacac 54
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 3 accggcggtctcggattcgcttggtgcaggtcgggaactgattggctgacaccgacacgt 62
|||| ||| |||||||||||||||||||||||||| ||| || |||||||| | |||||
Sbjct: 3 accgtcgggctcggattcgcttggtgcaggtcggg-actaatccgctgacacagccacgt 61
Query: 63 gtctt 67
|||||
Sbjct: 62 gtctt 66
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaac 40
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana
(thale cress)
Length = 142
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 ctcggattcgcttggtgcaggtcgggaac 40
|||||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 7 gcggtctcggattcgcttggtgcaggtcgggaac 40
|||||||| ||||||||||||||||||||||||
Sbjct: 7 gcggtctctaattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gattcgcttggtgcaggtcgggaac 40
|||||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 attcgcttggtgcaggtcgggaac 40
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
