miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46962_ath-miR169c:pmrd
Length = 411
Score = 365 bits (184), Expect = e-101
Identities = 200/208 (96%)
Strand = Plus / Plus
Query: 204 ctacatagttttagttgannnnnnnncgtacgtaatataatacgaaaaagtatttactta 263
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 204 ctacatagttttagttgattttttttcgtacgtaatataatacgaaaaagtatttactta 263
Query: 264 tttatatatgtgtgttggggcaagaagtgtaaccaagctagcccggcaagtcatctatgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttatatatgtgtgttggggcaagaagtgtaaccaagctagcccggcaagtcatctatgg 323
Query: 324 ctatgcaactgtctcttcctctcattctaggcttacgatgacacgtaaaaaatcccaaat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatgcaactgtctcttcctctcattctaggcttacgatgacacgtaaaaaatcccaaat 383
Query: 384 atcactaatatgatatgaatatggatga 411
||||||||||||||||||||||||||||
Sbjct: 384 atcactaatatgatatgaatatggatga 411
Score = 278 bits (140), Expect = 3e-75
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 tcgtccattatgagtattaattatggttagggaatcttacagaatgaaaatgaaggtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgtccattatgagtattaattatggttagggaatcttacagaatgaaaatgaaggtgtg 60
Query: 61 aatggattgtctcatctaaagccttgaatgtgggaaaaaggccattgttgttcagccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatggattgtctcatctaaagccttgaatgtgggaaaaaggccattgttgttcagccaag 120
Query: 121 gatgacttgccggtagcttg 140
||||||||||||||||||||
Sbjct: 121 gatgacttgccggtagcttg 140
>54091_ptc-miRf12269-akr:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 113 ttcagccaaggatgacttgccgg 91
>52526_ptc-miRf10704-akr:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 112 ttcagccaaggatgacttgccgg 90
>51676_ptc-miR169s:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>51665_ptc-miR169h:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 9 ttcagccaaggatgacttgccgg 31
>48877_osa-miR169b:pmrd
Length = 128
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccggta 135
|||||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccggta 33
>55020_zma-miR169r:pmrd
Length = 95
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgg 21
>55005_zma-miR169c:pmrd
Length = 134
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 21 cagccaaggatgacttgccgg 41
>54825_vvi-miR169w:pmrd
Length = 143
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccgg 33
>54821_vvi-miR169s:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccgg 33
>54818_vvi-miR169p:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 3e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 agccaaggatgacttgccggtagct 138
|||||||||||||||||||| ||||
Sbjct: 13 agccaaggatgacttgccggcagct 37
>54815_vvi-miR169m:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 3e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 114 agccaaggatgacttgccggtagct 138
|||||||||||||||||||| ||||
Sbjct: 13 agccaaggatgacttgccggcagct 37
>54813_vvi-miR169k:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccgg 33
>54812_vvi-miR169j:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccgg 33
>54805_vvi-miR169c:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccgg 33
>54803_vvi-miR169a:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccgg 33
>54547_sly-miR169a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 41 cagccaaggatgacttgccgg 61
>54447_sbi-miR169k:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgg 21
>54438_sbi-miR169b:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgg 21
>51664_ptc-miR169g:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccgg 31
>51663_ptc-miR169f:pmrd
Length = 239
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccgg 31
>51662_ptc-miR169e:pmrd
Length = 166
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccgg 31
>51661_ptc-miR169d:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccgg 31
>51339_phy-miR169:pmrd
Length = 146
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccgg 35
>50631_osa-miRf11416-akr:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 123 cagccaaggatgacttgccgg 103
>50630_osa-miRf11415-akr:pmrd
Length = 147
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 22 cagccaaggatgacttgccgg 42
>49845_osa-miRf10630-akr:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 103 cagccaaggatgacttgccgg 83
>48891_osa-miR169p:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 116 cagccaaggatgacttgccgg 96
>48878_osa-miR169c:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 11 cagccaaggatgacttgccgg 31
>48639_gso-miR169a:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgg 21
>48564_gma-miR169p:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 1 cagccaaggatgacttgccgg 21
>48561_gma-miR169a:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 21 cagccaaggatgacttgccgg 41
>47961_ath-miRf10861-akr:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 5 cagccaaggatgacttgccgg 25
>47674_ath-miRf10574-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 112 cagccaaggatgacttgccgg 92
>46965_ath-miR169f:pmrd
Length = 167
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 agccaaggatgacttgccggt 134
|||||||||||||||||||||
Sbjct: 34 agccaaggatgacttgccggt 54
>46961_ath-miR169b:pmrd
Length = 181
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 43 cagccaaggatgacttgccgg 63
>46875_aqc-miR169c:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccgg 133
|||||||||||||||||||||
Sbjct: 5 cagccaaggatgacttgccgg 25
