miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AB012243.1/43077-42837 3702:Arabidopsis thaliana
(thale cress)
Length = 241
Score = 222 bits (112), Expect = 3e-57
Identities = 128/136 (94%)
Strand = Plus / Plus
Query: 204 ctacatagttttagttgannnnnnnncgtacgtaatataatacgaaaaagtatttactta 263
|||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 106 ctacatagttttagttgattttttttcgtacgtaatataatacgaaaaagtatttactta 165
Query: 264 tttatatatgtgtgttggggcaagaagtgtaaccaagctagcccggcaagtcatctatgg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 tttatatatgtgtgttggggcaagaagtgtaaccaagctagcccggcaagtcatctatgg 225
Query: 324 ctatgcaactgtctct 339
||||||||||||||||
Sbjct: 226 ctatgcaactgtctct 241
Score = 83.8 bits (42), Expect = 2e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 99 aggccattgttgttcagccaaggatgacttgccggtagcttg 140
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggccattgttgttcagccaaggatgacttgccggtagcttg 42
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 111 ttcagccaaggatgacttgccgg 133
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccggta 135
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggta 34
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 113 cagccaaggatgacttgccggta 135
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggta 34
