miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 31 agaatgagattgagccaaggatgacttgccgatgttatcaacaaatcttaactgattttg 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatgagattgagccaaggatgacttgccgatgttatcaacaaatcttaactgattttg 60
Query: 91 gtgtccggcaagttgaccttggctctgtttccttcttt 128
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtccggcaagttgaccttggctctgtttccttcttt 98
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 121 bits (61), Expect = 3e-27
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 33 aatgagattgagccaaggatgacttgccgatgttatcaacaaatcttaactgattttggt 92
||||||||||||||||||||||||||||||| || ||||| |||||| ||||||| ||||
Sbjct: 3 aatgagattgagccaaggatgacttgccgattttctcaacgaatctt-actgattatggt 61
Query: 93 gtccggcaagttgaccttggctctgtttccttc 125
|||||||||||||| |||||||||||||||||
Sbjct: 62 atccggcaagttgactttggctctgtttccttc 94
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 89.7 bits (45), Expect = 1e-17
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 78 ttaactgattttggtgtccggcaagttgaccttggctctgtttccttct 126
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 55 ttaactgattctggtgtccggcaagttgaccttggctctgtttccttct 103
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 91 gtgtccggcaagttgaccttggctctgtttccttct 126
||||| ||||||||||||||||||||| ||| ||||
Sbjct: 90 gtgtctggcaagttgaccttggctctgcttcgttct 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 attgagccaaggatgacttgccg 61
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 attgagccaaggatgacttgccg 61
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ttgagccaaggatgacttgccg 61
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ttgagccaaggatgacttgccg 61
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ttgagccaaggatgacttgccg 61
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 40 ttgagccaaggatgacttgccg 61
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
