miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46964_ath-miR169e:pmrd
Length = 217
Score = 430 bits (217), Expect = e-121
Identities = 217/217 (100%)
Strand = Plus / Plus
Query: 1 tgatgatgatgatgagtcactaattaattgtatcatagagtcttgcatggaaaaatagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgatgatgatgatgagtcactaattaattgtatcatagagtcttgcatggaaaaatagaa 60
Query: 61 aatgagattgagccaaggatgacttgccgattttctcaacgaatcttactgattatggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatgagattgagccaaggatgacttgccgattttctcaacgaatcttactgattatggta 120
Query: 121 tccggcaagttgactttggctctgtttccttcccttcttttcgatgtcaaactctagata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tccggcaagttgactttggctctgtttccttcccttcttttcgatgtcaaactctagata 180
Query: 181 cctaaccacatatcatatatatcatcatcattcatca 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctaaccacatatcatatatatcatcatcattcatca 217
>46963_ath-miR169d:pmrd
Length = 154
Score = 184 bits (93), Expect = 2e-47
Identities = 140/153 (91%), Gaps = 2/153 (1%)
Strand = Plus / Plus
Query: 30 gtatcatagagtcttgcatggaaaaatagaa-aatgagattgagccaaggatgacttgcc 88
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 1 gtatcatagagtcttgcatggaaaaattaaagaatgagattgagccaaggatgacttgcc 60
Query: 89 gattttctcaacgaatctta-ctgattatggtatccggcaagttgactttggctctgttt 147
||| || ||||| ||||||| |||||| |||| |||||||||||||| ||||||||||||
Sbjct: 61 gatgttatcaacaaatcttaactgattttggtgtccggcaagttgaccttggctctgttt 120
Query: 148 ccttcccttcttttcgatgtcaaactctagata 180
||||| |||||||| |||||||||||||||||
Sbjct: 121 ccttcttttcttttcaatgtcaaactctagata 153
>48362_bna-miR169m:pmrd
Length = 163
Score = 125 bits (63), Expect = 1e-29
Identities = 132/154 (85%), Gaps = 2/154 (1%)
Strand = Plus / Plus
Query: 29 tgtatcatagagtcttgcatggaaaaatagaaaatgagattgagccaaggatgacttgcc 88
||||||| |||||| ||||||| |||||||| ||||| | |||||||| |||||||||||
Sbjct: 5 tgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgacttgcc 64
Query: 89 gattttctcaacgaatctta--ctgattatggtatccggcaagttgactttggctctgtt 146
|||||| ||| |||| | | ||||| ||||| | ||||||| |||||||||||||||
Sbjct: 65 gattttaccaaagaatttaaaactgataatggtgactggcaagtcgactttggctctgtt 124
Query: 147 tccttcccttcttttcgatgtcaaactctagata 180
|||||| |||||||||||||| | ||||||||||
Sbjct: 125 tccttctcttcttttcgatgtaagactctagata 158
>46967_ath-miR169g:pmrd
Length = 379
Score = 113 bits (57), Expect = 6e-26
Identities = 131/155 (84%), Gaps = 8/155 (5%)
Strand = Plus / Plus
Query: 28 ttgtatcatagagtcttgcatggaaaaatagaaaatgagattgagccaaggatgacttgc 87
|||||||| || ||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct: 103 ttgtatcagagggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgc 162
Query: 88 cgattttct----caacgaatctta----ctgattatggtatccggcaagttgactttgg 139
|| ||| | ||| |||||| | |||||| |||| |||||||||||||| ||||
Sbjct: 163 cgggtttttttaccaatgaatctaattaactgattctggtgtccggcaagttgaccttgg 222
Query: 140 ctctgtttccttcccttcttttcgatgtcaaactc 174
||||||||||||| |||||||| ||||||| ||||
Sbjct: 223 ctctgtttccttctcttcttttggatgtcagactc 257
>46966_ath-miR169g:pmrd
Length = 379
Score = 113 bits (57), Expect = 6e-26
Identities = 131/155 (84%), Gaps = 8/155 (5%)
Strand = Plus / Plus
Query: 28 ttgtatcatagagtcttgcatggaaaaatagaaaatgagattgagccaaggatgacttgc 87
|||||||| || ||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct: 103 ttgtatcagagggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgc 162
Query: 88 cgattttct----caacgaatctta----ctgattatggtatccggcaagttgactttgg 139
|| ||| | ||| |||||| | |||||| |||| |||||||||||||| ||||
Sbjct: 163 cgggtttttttaccaatgaatctaattaactgattctggtgtccggcaagttgaccttgg 222
Query: 140 ctctgtttccttcccttcttttcgatgtcaaactc 174
||||||||||||| |||||||| ||||||| ||||
Sbjct: 223 ctctgtttccttctcttcttttggatgtcagactc 257
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 73.8 bits (37), Expect = 5e-14
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 108 actgattatggtatccggcaagttgactttggctctgtttccttcccttcttt 160
||||||| |||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct: 67 actgattctggtgtccggcaagttgaccttggctctgtttccttctcttcttt 119
>54818_vvi-miR169p:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgagccaaggatgacttgccg 89
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>54814_vvi-miR169l:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgagccaaggatgacttgccg 89
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>48351_bna-miR169b:pmrd
Length = 188
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgattt 93
|||||||||||||||||||||||
Sbjct: 19 agccaaggatgacttgccgattt 41
>48350_bna-miR169a:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgattt 93
|||||||||||||||||||||||
Sbjct: 20 agccaaggatgacttgccgattt 42
>46965_ath-miR169f:pmrd
Length = 167
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgagccaaggatgacttgccg 89
|||||||||||||||||||||||
Sbjct: 30 attgagccaaggatgacttgccg 52
>46960_ath-miR169a:pmrd
Length = 226
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgattt 93
|||||||||||||||||||||||
Sbjct: 19 agccaaggatgacttgccgattt 41
>54817_vvi-miR169o:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ttgagccaaggatgacttgccg 89
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>51671_ptc-miR169n:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ttgagccaaggatgacttgccg 89
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>55023_zma-miR169u:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgat 22
>55022_zma-miR169t:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgat 22
>55004_zma-miR169b:pmrd
Length = 156
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccgat 42
>55003_zma-miR169a:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccgat 42
>54820_vvi-miR169r:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 67 attgagccaaggatgacttgccgat 91
|||||| ||||||||||||||||||
Sbjct: 9 attgagtcaaggatgacttgccgat 33
>54815_vvi-miR169m:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 69 tgagccaaggatgacttgccg 89
|||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccg 31
>54437_sbi-miR169a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgat 22
>48876_osa-miR169a:pmrd
Length = 173
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 39 agccaaggatgacttgccgat 59
>48562_gma-miR169b:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgat 91
|||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgat 32
>55021_zma-miR169s:pmrd
Length = 150
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccga 21
>54819_vvi-miR169q:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 gagccaaggatgacttgccg 89
||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccg 31
>54816_vvi-miR169n:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 gagccaaggatgacttgccg 89
||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccg 31
>54809_vvi-miR169g:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccga 33
>54808_vvi-miR169f:pmrd
Length = 184
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccga 33
>54549_sly-miR169c:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 42 agccaaggatgacttgccga 61
>54367_ptr-miR169a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccga 21
>52490_ptc-miRf10668-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 gagccaaggatgacttgccg 89
||||||||||||||||||||
Sbjct: 1 gagccaaggatgacttgccg 20
>52003_ptc-miRf10181-akr:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 11 agccaaggatgacttgccga 30
>51676_ptc-miR169s:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 gattgagccaaggatgacttgccg 89
|||| |||||||||||||||||||
Sbjct: 8 gattcagccaaggatgacttgccg 31
>51660_ptc-miR169c:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccga 31
>51659_ptc-miR169b:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccga 31
>51652_ptc-miR169a:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccga 31
>48719_mtr-miR169c:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 81 agccaaggatgacttgccga 62
>48718_mtr-miR169b:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccga 41
>48717_mtr-miR169a:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccga 41
>48563_gma-miR169c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccga 31
>48309_bdi-miR169a:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 17 agccaaggatgacttgccga 36
>46859_ama-miR169:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccga 90
||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccga 34
