miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 192 bits (97), Expect = 1e-48
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 59 aaaatgagattgagccaaggatgacttgccgattttctcaacgaatcttactgattatgg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaatgagattgagccaaggatgacttgccgattttctcaacgaatcttactgattatgg 60
Query: 119 tatccggcaagttgactttggctctgtttccttccct 155
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatccggcaagttgactttggctctgtttccttccct 97
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 121 bits (61), Expect = 4e-27
Identities = 86/93 (92%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 61 aatgagattgagccaaggatgacttgccgattttctcaacgaatctt-actgattatggt 119
||||||||||||||||||||||||||||||| || ||||| |||||| ||||||| ||||
Sbjct: 3 aatgagattgagccaaggatgacttgccgatgttatcaacaaatcttaactgattttggt 62
Query: 120 atccggcaagttgactttggctctgtttccttc 152
|||||||||||||| |||||||||||||||||
Sbjct: 63 gtccggcaagttgaccttggctctgtttccttc 95
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 65.9 bits (33), Expect = 2e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 108 actgattatggtatccggcaagttgactttggctctgtttccttc 152
||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct: 58 actgattctggtgtccggcaagttgaccttggctctgtttccttc 102
>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa
subsp. pekinensis
Length = 177
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgattt 93
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgattt 35
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 agccaaggatgacttgccgattt 93
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgattt 35
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgagccaaggatgacttgccg 89
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 attgagccaaggatgacttgccg 89
|||||||||||||||||||||||
Sbjct: 9 attgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ttgagccaaggatgacttgccg 89
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ttgagccaaggatgacttgccg 89
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ttgagccaaggatgacttgccg 89
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 ttgagccaaggatgacttgccg 89
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
