miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46965_ath-miR169f:pmrd
Length = 167
Score = 331 bits (167), Expect = 1e-91
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 1 gggtcttgcatgaaggaataacgaatggaattgagccaaggatgacttgccggtttaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggtcttgcatgaaggaataacgaatggaattgagccaaggatgacttgccggtttaaac 60
Query: 61 ccaaccggtttatgaccattgatttggtctcattcacaatctgttgattcgtgtctggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaaccggtttatgaccattgatttggtctcattcacaatctgttgattcgtgtctggca 120
Query: 121 agttgaccttggctctgcttcgttctctattcttccatgttagattc 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttgaccttggctctgcttcgttctctattcttccatgttagattc 167
>54818_vvi-miR169p:pmrd
Length = 102
Score = 56.0 bits (28), Expect = 9e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
||||||||||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccgg 32
>54814_vvi-miR169l:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 111 gtgtctggcaagttgaccttggctctgcttcgttctct 148
||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 77 gtgtccggcaagttgaccttggctctgtttccttctct 114
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 ttgagccaaggatgacttgccgg 53
|||||||||||||||||||||||
Sbjct: 19 ttgagccaaggatgacttgccgg 41
>46967_ath-miR169g:pmrd
Length = 379
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 111 gtgtctggcaagttgaccttggctctgcttcgttctct 148
||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 201 gtgtccggcaagttgaccttggctctgtttccttctct 238
Score = 50.1 bits (25), Expect = 5e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 gggtcttgcatgaaggaataacgaatggaattgagccaaggatgacttgccgg 53
|||||||||||| | ||||| ||||| |||||||||||||||||||||||
Sbjct: 113 gggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgccgg 165
>46966_ath-miR169g:pmrd
Length = 379
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 111 gtgtctggcaagttgaccttggctctgcttcgttctct 148
||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 201 gtgtccggcaagttgaccttggctctgtttccttctct 238
Score = 50.1 bits (25), Expect = 5e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 1 gggtcttgcatgaaggaataacgaatggaattgagccaaggatgacttgccgg 53
|||||||||||| | ||||| ||||| |||||||||||||||||||||||
Sbjct: 113 gggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgccgg 165
>54819_vvi-miR169q:pmrd
Length = 97
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
|||||| |||||||||||||||||||||
Sbjct: 5 tggaatagagccaaggatgacttgccgg 32
>54816_vvi-miR169n:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
|||||| |||||||||||||||||||||
Sbjct: 5 tggaatagagccaaggatgacttgccgg 32
>54815_vvi-miR169m:pmrd
Length = 102
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccgg 53
||||| ||||||||||||||||||||||
Sbjct: 5 tggaagtgagccaaggatgacttgccgg 32
>46963_ath-miR169d:pmrd
Length = 154
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 111 gtgtctggcaagttgaccttggctctgcttcgttct 146
||||| ||||||||||||||||||||| ||| ||||
Sbjct: 91 gtgtccggcaagttgaccttggctctgtttccttct 126
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 attgagccaaggatgacttgccg 52
|||||||||||||||||||||||
Sbjct: 39 attgagccaaggatgacttgccg 61
>54823_vvi-miR169u:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||| ||||||||||||||||
Sbjct: 5 tggaattgagtcaaggatgacttgccg 31
>54820_vvi-miR169r:pmrd
Length = 109
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||| ||||||||||||||||
Sbjct: 5 tggaattgagtcaaggatgacttgccg 31
>54817_vvi-miR169o:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||| ||||||||||||||||||||||
Sbjct: 5 tggatttgagccaaggatgacttgccg 31
>54811_vvi-miR169i:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||||||||||||||||||||| ||||
Sbjct: 5 tggaattgagccaaggatgactggccg 31
>54810_vvi-miR169h:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
||||||||||||||||||| |||||||
Sbjct: 5 tggaattgagccaaggatggcttgccg 31
>51671_ptc-miR169n:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 tggaattgagccaaggatgacttgccg 52
|||| ||||||||||||||||||||||
Sbjct: 5 tggatttgagccaaggatgacttgccg 31
>46964_ath-miR169e:pmrd
Length = 217
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 attgagccaaggatgacttgccg 52
|||||||||||||||||||||||
Sbjct: 67 attgagccaaggatgacttgccg 89
>48350_bna-miR169a:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccggtttaaa 59
||||||||||||||||||| ||||||
Sbjct: 20 agccaaggatgacttgccgatttaaa 45
>46960_ath-miR169a:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccggtttaaa 59
||||||||||||||||||| ||||||
Sbjct: 19 agccaaggatgacttgccgatttaaa 44
>54804_vvi-miR169b:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 gaattgagccaaggatgacttgccg 52
||||||||||||||||| |||||||
Sbjct: 7 gaattgagccaaggatggcttgccg 31
>54091_ptc-miRf12269-akr:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 29 aattgagccaaggatgacttgccgg 53
|||| ||||||||||||||||||||
Sbjct: 115 aattcagccaaggatgacttgccgg 91
>52526_ptc-miRf10704-akr:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 29 aattgagccaaggatgacttgccgg 53
|||| ||||||||||||||||||||
Sbjct: 114 aattcagccaaggatgacttgccgg 90
>51665_ptc-miR169h:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 29 aattgagccaaggatgacttgccgg 53
|||| ||||||||||||||||||||
Sbjct: 7 aattcagccaaggatgacttgccgg 31
>48877_osa-miR169b:pmrd
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccggt 54
|||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggt 32
>46962_ath-miR169c:pmrd
Length = 411
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccggt 54
|||||||||||||||||||||
Sbjct: 114 agccaaggatgacttgccggt 134
>55020_zma-miR169r:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgg 21
>55019_zma-miR169q:pmrd
Length = 69
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 6 agccaaggatgacttgccgg 25
>55018_zma-miR169p:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 4 agccaaggatgacttgccgg 23
>55017_zma-miR169o:pmrd
Length = 145
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 125 agccaaggatgacttgccgg 144
>55016_zma-miR169n:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 3 agccaaggatgacttgccgg 22
>55005_zma-miR169c:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccgg 41
>54825_vvi-miR169w:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33
>54821_vvi-miR169s:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33
>54813_vvi-miR169k:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33
>54812_vvi-miR169j:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33
>54805_vvi-miR169c:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33
>54803_vvi-miR169a:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccgg 33
>54638_sof-miR169:pmrd
Length = 143
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgg 21
>54547_sly-miR169a:pmrd
Length = 149
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 42 agccaaggatgacttgccgg 61
>54447_sbi-miR169k:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgg 21
>54446_sbi-miR169j:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 4 agccaaggatgacttgccgg 23
>54438_sbi-miR169b:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgg 21
>52490_ptc-miRf10668-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 gagccaaggatgacttgccg 52
||||||||||||||||||||
Sbjct: 1 gagccaaggatgacttgccg 20
>51676_ptc-miR169s:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccgg 32
>51664_ptc-miR169g:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31
>51663_ptc-miR169f:pmrd
Length = 239
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31
>51662_ptc-miR169e:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31
>51661_ptc-miR169d:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31
>51339_phy-miR169:pmrd
Length = 146
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccgg 35
>50631_osa-miRf11416-akr:pmrd
Length = 141
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 122 agccaaggatgacttgccgg 103
>50630_osa-miRf11415-akr:pmrd
Length = 147
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 23 agccaaggatgacttgccgg 42
>49845_osa-miRf10630-akr:pmrd
Length = 114
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 102 agccaaggatgacttgccgg 83
>48891_osa-miR169p:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 115 agccaaggatgacttgccgg 96
>48880_osa-miR169e:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31
>48878_osa-miR169c:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccgg 31
>48640_gso-miR169g*:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgccgg 20
>48639_gso-miR169a:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgg 21
>48564_gma-miR169p:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 2 agccaaggatgacttgccgg 21
>48561_gma-miR169a:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 22 agccaaggatgacttgccgg 41
>48310_bdi-miR169b:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 20 agccaaggatgacttgccgg 39
>47961_ath-miRf10861-akr:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 6 agccaaggatgacttgccgg 25
>47674_ath-miRf10574-akr:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 111 agccaaggatgacttgccgg 92
>46961_ath-miR169b:pmrd
Length = 181
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 44 agccaaggatgacttgccgg 63
>46875_aqc-miR169c:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 34 agccaaggatgacttgccgg 53
||||||||||||||||||||
Sbjct: 6 agccaaggatgacttgccgg 25
