miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46967_ath-miR169g:pmrd
Length = 379
Score = 577 bits (291), Expect = e-165
Identities = 305/312 (97%)
Strand = Plus / Plus
Query: 1 tgcctataaataccttcatcacgagtatgacaagatcacaagacaagaaaagaaaggtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctataaataccttcatcacgagtatgacaagatcacaagacaagaaaagaaaggtag 60
Query: 61 agaaaacatgataatgatgattacgatgatgagagtctctagttgtatcagagggtcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaaacatgataatgatgattacgatgatgagagtctctagttgtatcagagggtcttg 120
Query: 121 catggaagaatagagaatgaggttgagccaaggatgacttgccgggnnnnnnnaccaatg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 catggaagaatagagaatgaggttgagccaaggatgacttgccgggtttttttaccaatg 180
Query: 181 aatctaattaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatctaattaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttc 240
Query: 241 ttttggatgtcagactccaagatatctatcatcatgaatcgtgatcaaactttgtaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttggatgtcagactccaagatatctatcatcatgaatcgtgatcaaactttgtaattt 300
Query: 301 cattgaaatgtg 312
||||||||||||
Sbjct: 301 cattgaaatgtg 312
>46966_ath-miR169g:pmrd
Length = 379
Score = 577 bits (291), Expect = e-165
Identities = 305/312 (97%)
Strand = Plus / Plus
Query: 1 tgcctataaataccttcatcacgagtatgacaagatcacaagacaagaaaagaaaggtag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctataaataccttcatcacgagtatgacaagatcacaagacaagaaaagaaaggtag 60
Query: 61 agaaaacatgataatgatgattacgatgatgagagtctctagttgtatcagagggtcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaaaacatgataatgatgattacgatgatgagagtctctagttgtatcagagggtcttg 120
Query: 121 catggaagaatagagaatgaggttgagccaaggatgacttgccgggnnnnnnnaccaatg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 121 catggaagaatagagaatgaggttgagccaaggatgacttgccgggtttttttaccaatg 180
Query: 181 aatctaattaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatctaattaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttc 240
Query: 241 ttttggatgtcagactccaagatatctatcatcatgaatcgtgatcaaactttgtaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttggatgtcagactccaagatatctatcatcatgaatcgtgatcaaactttgtaattt 300
Query: 301 cattgaaatgtg 312
||||||||||||
Sbjct: 301 cattgaaatgtg 312
>48239_ath-miRf11139-akr:pmrd
Length = 119
Score = 194 bits (98), Expect = 4e-50
Identities = 112/119 (94%)
Strand = Plus / Plus
Query: 125 gaagaatagagaatgaggttgagccaaggatgacttgccgggnnnnnnnaccaatgaatc 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 gaagaatagagaatgaggttgagccaaggatgacttgccgggtttttttaccaatgaatc 60
Query: 185 taattaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttcttt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taattaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttcttt 119
>46963_ath-miR169d:pmrd
Length = 154
Score = 99.6 bits (50), Expect = 2e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 188 ttaactgattctggtgtccggcaagttgaccttggctctgtttccttctcttcttttgga 247
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 78 ttaactgattttggtgtccggcaagttgaccttggctctgtttccttcttttcttttcaa 137
Query: 248 tgtcagactc 257
||||| ||||
Sbjct: 138 tgtcaaactc 147
>46964_ath-miR169e:pmrd
Length = 217
Score = 91.7 bits (46), Expect = 4e-19
Identities = 127/155 (81%), Gaps = 8/155 (5%)
Strand = Plus / Plus
Query: 103 ttgtatcagagggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgc 162
|||||||| || ||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct: 28 ttgtatcatagagtcttgcatggaaaaatagaaaatgagattgagccaaggatgacttgc 87
Query: 163 cgggnnnnnnnaccaatgaatctaattaactgattctggtgtccggcaagttgaccttgg 222
|| ||| |||||| | |||||| |||| |||||||||||||| ||||
Sbjct: 88 cgattttct----caacgaatctta----ctgattatggtatccggcaagttgactttgg 139
Query: 223 ctctgtttccttctcttcttttggatgtcagactc 257
||||||||||||| |||||||| ||||||| ||||
Sbjct: 140 ctctgtttccttcccttcttttcgatgtcaaactc 174
>48362_bna-miR169m:pmrd
Length = 163
Score = 77.8 bits (39), Expect = 6e-15
Identities = 125/154 (81%), Gaps = 6/154 (3%)
Strand = Plus / Plus
Query: 104 tgtatcagagggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgcc 163
|||||||||| ||| ||||||| | |||||||||||| |||||||| |||||||||||
Sbjct: 5 tgtatcagagagtcatgcatgggaaaatagagaatgataatgagccaaagatgacttgcc 64
Query: 164 gggnnnnnnnaccaatgaatctaattaactgattctggtgtccggcaagttgaccttggc 223
| ||||| |||| ||| ||||||| ||||| | ||||||| ||| |||||
Sbjct: 65 g----attttaccaaagaatttaa--aactgataatggtgactggcaagtcgactttggc 118
Query: 224 tctgtttccttctcttcttttggatgtcagactc 257
||||||||||||||||||||| ||||| ||||||
Sbjct: 119 tctgtttccttctcttcttttcgatgtaagactc 152
>46965_ath-miR169f:pmrd
Length = 167
Score = 52.0 bits (26), Expect = 3e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 201 gtgtccggcaagttgaccttggctctgtttccttctct 238
||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 111 gtgtctggcaagttgaccttggctctgcttcgttctct 148
Score = 50.1 bits (25), Expect = 1e-06
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 113 gggtcttgcatggaagaatagagaatgaggttgagccaaggatgacttgccgg 165
|||||||||||| | ||||| ||||| |||||||||||||||||||||||
Sbjct: 1 gggtcttgcatgaaggaataacgaatggaattgagccaaggatgacttgccgg 53
>54818_vvi-miR169p:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 2e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccgg 165
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>54817_vvi-miR169o:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccg 164
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>54815_vvi-miR169m:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 144 tgagccaaggatgacttgccgg 165
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgg 32
>54814_vvi-miR169l:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccg 164
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>51671_ptc-miR169n:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccg 164
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>55017_zma-miR169o:pmrd
Length = 145
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 146 agccaaggatgacttgccggg 166
|||||||||||||||||||||
Sbjct: 125 agccaaggatgacttgccggg 145
>54819_vvi-miR169q:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 gagccaaggatgacttgccgg 165
|||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccgg 32
>54816_vvi-miR169n:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 145 gagccaaggatgacttgccgg 165
|||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccgg 32
>48310_bdi-miR169b:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 146 agccaaggatgacttgccggg 166
|||||||||||||||||||||
Sbjct: 20 agccaaggatgacttgccggg 40
