miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 167 bits (84), Expect = 1e-40
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 134 agaatgaggttgagccaaggatgacttgccgggnnnnnnnaccaatgaatctaattaact 193
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 agaatgaggttgagccaaggatgacttgccgggtttttttaccaatgaatctaattaact 60
Query: 194 gattctggtgtccggcaagttgaccttggctctgtttccttctct 238
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gattctggtgtccggcaagttgaccttggctctgtttccttctct 105
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 89.7 bits (45), Expect = 3e-17
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 188 ttaactgattctggtgtccggcaagttgaccttggctctgtttccttct 236
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 48 ttaactgattttggtgtccggcaagttgaccttggctctgtttccttct 96
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 65.9 bits (33), Expect = 4e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 191 actgattctggtgtccggcaagttgaccttggctctgtttccttc 235
||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct: 50 actgattatggtatccggcaagttgactttggctctgtttccttc 94
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 136 aatgaggttgagccaaggatgacttgccg 164
|||||| ||||||||||||||||||||||
Sbjct: 3 aatgagattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 52.0 bits (26), Expect = 6e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 201 gtgtccggcaagttgaccttggctctgtttccttctct 238
||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 90 gtgtctggcaagttgaccttggctctgcttcgttctct 127
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccgg 165
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF01059;mir-598;AAGJ02208030.1/43-137 7668:Strongylocentrotus
purpuratus
Length = 95
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 atgataatgatgattacgatgatga 92
|||||||||||||||||||||||||
Sbjct: 3 atgataatgatgattacgatgatga 27
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccgg 165
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccgg 165
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 143 ttgagccaaggatgacttgccgg 165
|||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccgg 32
