miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AY551203.1/210-25 3702:Arabidopsis thaliana (thale
cress)
Length = 186
Score = 369 bits (186), Expect = e-101
Identities = 186/186 (100%)
Strand = Plus / Minus
Query: 25 cgaaaagagtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgat 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgaaaagagtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgat 127
Query: 85 tcaattttaagttcgtggattttggattattatgcgtttaaaaggtataataatttgaga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcaattttaagttcgtggattttggattattatgcgtttaaaaggtataataatttgaga 67
Query: 145 tcatgttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tcatgttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 7
Query: 205 cttcat 210
||||||
Sbjct: 6 cttcat 1
>RF00645;MIR169_2;AY551203.1/30-206 3702:Arabidopsis thaliana (thale
cress)
Length = 177
Score = 351 bits (177), Expect = 2e-96
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 30 agagtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgattcaat 89
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgattcaat 60
Query: 90 tttaagttcgtggattttggattattatgcgtttaaaaggtataataatttgagatcatg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttaagttcgtggattttggattattatgcgtttaaaaggtataataatttgagatcatg 120
Query: 150 ttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgctttct 206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgctttct 177
>RF00865;MIR169_5;AB016889.1/38805-38989 3702:Arabidopsis thaliana
(thale cress)
Length = 185
Score = 258 bits (130), Expect = 3e-68
Identities = 173/186 (93%), Gaps = 1/186 (0%)
Strand = Plus / Minus
Query: 25 cgaaaagagtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgat 84
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cgaaaagagtcatgtttagtagccaaggatgacttgcctgatctttttcacctccatgat 126
Query: 85 tcaattttaagttcgtggattttggattattatgcgtttaaaaggtataataatttgaga 144
||||||| | ||| ||| |||||||||||||| | || ||||| ||||||||||||| |
Sbjct: 125 tcaatttgtaattcatgggttttggattattatacattcaaaag-tataataatttgaaa 67
Query: 145 tcatgttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 204
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 66 tcatgttgaatcttgcgggttaggtttcaggcagtctccttggctatcttgacatgcttt 7
Query: 205 cttcat 210
|||||
Sbjct: 6 tttcat 1
>RF00645;MIR169_2;AY551201.1/49-220 3702:Arabidopsis thaliana (thale
cress)
Length = 172
Score = 240 bits (121), Expect = 7e-63
Identities = 161/173 (93%), Gaps = 1/173 (0%)
Strand = Plus / Plus
Query: 32 agtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgattcaattt 91
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcatgtttagtagccaaggatgacttgcctgatctttttcacctccatgattcaattt 60
Query: 92 taagttcgtggattttggattattatgcgtttaaaaggtataataatttgagatcatgtt 151
| ||| ||| |||||||||||||| | || ||||| ||||||||||||| ||||||||
Sbjct: 61 gtaattcatgggttttggattattatacattcaaaag-tataataatttgaaatcatgtt 119
Query: 152 gaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 204
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 120 gaatcttgcgggttaggtttcaggcagtctccttggctatcttgacatgcttt 172
>RF00865;MIR169_5;AB016889.1/45011-45196 3702:Arabidopsis thaliana
(thale cress)
Length = 186
Score = 194 bits (98), Expect = 3e-49
Identities = 160/178 (89%), Gaps = 2/178 (1%)
Strand = Plus / Minus
Query: 28 aaagagtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgattca 87
|||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 183 aaagcgtcatgtttagtagccaaggatgacttgcctgatctttttcgcctccacgattca 124
Query: 88 attttaagttcgtggattttggattattatgcgtttaaaaggtataataatttgag-atc 146
|||| || ||| || ||||||||||||||| | ||| |||| ||||||| | | |||
Sbjct: 123 atttcaaattcatgcattttggattattataccttttaaag-tataataggtcaaatatc 65
Query: 147 atgttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 atgttgaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 7
>RF00645;MIR169_2;AB016889.1/45191-45017 3702:Arabidopsis thaliana
(thale cress)
Length = 175
Score = 192 bits (97), Expect = 1e-48
Identities = 156/173 (90%), Gaps = 2/173 (1%)
Strand = Plus / Plus
Query: 33 gtcatgtttaatagccaaggatgacttgcctgatctttttcacctccatgattcaatttt 92
|||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 4 gtcatgtttagtagccaaggatgacttgcctgatctttttcgcctccacgattcaatttc 63
Query: 93 aagttcgtggattttggattattatgcgtttaaaaggtataataatttgag-atcatgtt 151
|| ||| || ||||||||||||||| | ||| |||| ||||||| | | ||||||||
Sbjct: 64 aaattcatgcattttggattattataccttttaaag-tataataggtcaaatatcatgtt 122
Query: 152 gaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gaatcttgcgggttaggtttcaggcagtctctttggctatcttgacatgcttt 175
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcct 63
||||||||||||| |||||||||||||||||||||
Sbjct: 151 aagagtcatgtttgatagccaaggatgacttgcct 117
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcctg 64
||||||| ||||| ||||||||||||||||||||||
Sbjct: 154 aagagtcttgtttgatagccaaggatgacttgcctg 119
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcctg 64
||||||| ||||| ||||||||||||||||||||||
Sbjct: 160 aagagtcttgtttgatagccaaggatgacttgcctg 125
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcctg 64
||||||| ||||| ||||||||||||||||||||||
Sbjct: 148 aagagtcttgtttgatagccaaggatgacttgcctg 113
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 32 agtcatgtttaatagccaaggatgacttgcct 63
|||||||||| |||||||||||||||||||||
Sbjct: 1 agtcatgtttgatagccaaggatgacttgcct 32
>RF00865;MIR169_5;AASG02003941.1/7918-8066 3988:Ricinus communis
(castor bean)
Length = 149
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 26 gaaaagagtcatgtttaatagccaaggatgacttgcctg 64
|||||||||| ||| | ||||||||||||||||||||||
Sbjct: 148 gaaaagagtcttgtctgatagccaaggatgacttgcctg 110
>RF00865;MIR169_5;AASG02003632.1/6431-6569 3988:Ricinus communis
(castor bean)
Length = 139
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 27 aaaagagtcatgtttaatagccaaggatgacttgcctg 64
||||||||| ||||| ||||||||| ||||||||||||
Sbjct: 137 aaaagagtcttgtttgatagccaagaatgacttgcctg 100
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 28 aaagagtcatgtttaatagccaaggatgacttgcctg 64
|||||||| ||||| |||||||||||||||||||||
Sbjct: 140 aaagagtcttgtttggtagccaaggatgacttgcctg 104
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 168 gtttcaggcagtctctttggctatcttgac 197
||||||||||||||| ||||||| ||||||
Sbjct: 43 gtttcaggcagtctccttggctaacttgac 14
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 32 agtcatgtttaatagccaaggatgacttgcctg 64
|||| ||||| ||||||||||||||||||||||
Sbjct: 1 agtcttgtttgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus
trichocarpa
Length = 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 32 agtcatgtttaatagccaaggatgacttgcctg 64
|||| ||||| ||||||||||||||||||||||
Sbjct: 1 agtcttgtttgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 32 agtcatgtttaatagccaaggatgacttgcctg 64
|||| ||||| ||||||||||||||||||||||
Sbjct: 1 agtcttgtttgatagccaaggatgacttgcctg 33
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcctg 64
||||||| ||||| |||||||||||||||||||||
Sbjct: 135 aagagtcttgtttggtagccaaggatgacttgcctg 100
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 36 atgtttaatagccaaggatgacttgcct 63
|||||| |||||||||||||||||||||
Sbjct: 140 atgtttgatagccaaggatgacttgcct 113
>RF00865;MIR169_5;CAAP02000001.1/222751-222589 29760:Vitis vinifera
Length = 163
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcctg 64
||||||| ||| | ||||||||||||||||||||||
Sbjct: 159 aagagtcttgtctgatagccaaggatgacttgcctg 124
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 36 atgtttaatagccaaggatgacttgcct 63
|||||| |||||||||||||||||||||
Sbjct: 5 atgtttgatagccaaggatgacttgcct 32
>RF00645;MIR169_2;AC146747.7/125787-125634 3880:Medicago
truncatula (barrel medic)
Length = 154
Score = 48.1 bits (24), Expect = 5e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 32 agtcatgtttaatagccaaggatgacttgcct 63
||||||||||| |||||||||||||||||||
Sbjct: 1 agtcatgtttataagccaaggatgacttgcct 32
>RF00865;MIR169_5;ABIM01022203.1/1489-1639 3649:Carica papaya
(papaya)
Length = 151
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 43 atagccaaggatgacttgcctga 65
|||||||||||||||||||||||
Sbjct: 133 atagccaaggatgacttgcctga 111
>RF00645;MIR169_2;ABIM01022203.1/1632-1495 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctga 65
|||||||||||||||||||||||
Sbjct: 12 atagccaaggatgacttgcctga 34
>RF00865;MIR169_5;AY551200.1/193-29 3702:Arabidopsis thaliana (thale
cress)
Length = 165
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 tagccaaggatgacttgcctga 65
||||||||||||||||||||||
Sbjct: 146 tagccaaggatgacttgcctga 125
>RF00865;MIR169_5;AARH01003823.1/108214-108346 3694:Populus
trichocarpa
Length = 133
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcc 62
||||||| ||||| |||||||||||||||||||
Sbjct: 129 aagagtcgtgtttggtagccaaggatgacttgcc 96
>RF00865;MIR169_5;AARH01000472.1/145584-145453 3694:Populus
trichocarpa
Length = 132
Score = 44.1 bits (22), Expect = 8e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 29 aagagtcatgtttaatagccaaggatgacttgcc 62
||||||| ||||| |||||||||||||||||||
Sbjct: 128 aagagtcgtgtttggtagccaaggatgacttgcc 95
>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 tgtttaatagccaaggatgacttgcc 62
||||| ||||||||||||||||||||
Sbjct: 113 tgtttgatagccaaggatgacttgcc 88
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 135 atagccaaggatgacttgcctg 114
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 134 atagccaaggatgacttgcctg 113
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 109 atagccaaggatgacttgcctg 88
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 156 atagccaaggatgacttgcctg 135
>RF00645;MIR169_2;AB016889.1/38604-38454 3702:Arabidopsis thaliana
(thale cress)
Length = 151
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 tagccaaggatgacttgcctga 65
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctga 33
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 168 gtttcaggcagtctctttggctatcttgac 197
||||||||||||||| ||||||| ||||||
Sbjct: 94 gtttcaggcagtctccttggctaacttgac 123
>RF00645;MIR169_2;AASG02003941.1/7763-7653 3988:Ricinus communis
(castor bean)
Length = 111
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 tgtttaatagccaaggatgacttgcc 62
||||| ||||||||||||||||||||
Sbjct: 5 tgtttgatagccaaggatgacttgcc 30
>RF00645;MIR169_2;AASG02003941.1/8059-7924 3988:Ricinus communis
(castor bean)
Length = 136
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 12 atagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AM487000.2/29208-29357 29760:Vitis vinifera
Length = 150
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 12 atagccaaggatgacttgcctg 33
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 12 atagccaaggatgacttgcctg 33
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 9 atagccaaggatgacttgcctg 30
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 9 atagccaaggatgacttgcctg 30
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 atagccaaggatgacttgcctg 64
||||||||||||||||||||||
Sbjct: 12 atagccaaggatgacttgcctg 33
