miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39848_aly-MIR170:mirbase
Length = 212
Score = 153 bits (77), Expect = 3e-38
Identities = 90/93 (96%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 1 cgagagagtccctctgatattggcctggttcactcagattctcttttactaactcatctg 60
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 60 cgagagagtccctctgatattggcctggttcactcagattctccta-actaactcatctg 118
Query: 61 attgagccgtgtcaatatctcagtcctctctcg 93
|||||||||||||||||||||||||||||||||
Sbjct: 119 attgagccgtgtcaatatctcagtcctctctcg 151
>39849_aly-MIR171a:mirbase
Length = 198
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 cgagagagtccctctgatattggcctggttcactcagat 39
||||||||||||| |||||||||||||||||||||||||
Sbjct: 42 cgagagagtccctttgatattggcctggttcactcagat 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatctcagtcctctctcg 93
|||||||||||||| | |||||||||||| ||||||||
Sbjct: 127 atctgattgagccgcgccaatatctcagtactctctcg 164
>40060_ath-MIR171a:mirbase
Length = 123
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 gagagagtccctctgatattggcctggttcactcagat 39
|||||||||||| |||||||||||||||||||||||||
Sbjct: 3 gagagagtccctttgatattggcctggttcactcagat 40
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatctcagtcctctctcg 93
|||||||||||||| | |||||||||||| ||||||||
Sbjct: 85 atctgattgagccgcgccaatatctcagtactctctcg 122
>40322_bra-MIR171e:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatctcagtcctctctcg 93
|||||||||||||| | |||||||||||| ||||||||
Sbjct: 81 atctgattgagccgcgccaatatctcagtgctctctcg 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcagat 39
|||||||||||||||||||||||||
Sbjct: 17 tgatattggcctggttcactcagat 41
>40290_bna-MIR171f:mirbase
Length = 119
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatctcagtcctctctcg 93
|||||||||||||| | |||||||||||| ||||||||
Sbjct: 81 atctgattgagccgcgccaatatctcagtgctctctcg 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcagat 39
|||||||||||||||||||||||||
Sbjct: 17 tgatattggcctggttcactcagat 41
>42764_zma-MIR171d:mirbase
Length = 121
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||||||| ||||
Sbjct: 80 tctgattgagccgtgccaatatctcagtactct 112
>42640_tae-MIR171a:mirbase
Length = 130
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||||||| ||||
Sbjct: 87 tctgattgagccgtgccaatatctcagtgctct 119
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||||||| ||||
Sbjct: 112 tctgattgagccgtgccaatatctcagtactct 144
>41389_ptc-MIR171i:mirbase
Length = 129
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcagat 39
|||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagat 34
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 100 tgattgagccgtgccaatatctcagt 125
>40291_bna-MIR171g:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcagatt 40
|||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatt 25
>41538_sly-MIR171a:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 15 tgatattggcctggttcactcaga 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 87 tgattgagccgtgccaatatctcagt 112
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 20 tgatattggcctggttcactcaga 43
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatct 80
||||||||||||||| ||||||||
Sbjct: 93 tctgattgagccgtgccaatatct 116
>40364_rco-MIR171f:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 3 tgatattggcctggttcactcaga 26
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 86 tgattgagccgtgccaatatctcagt 111
>41984_osa-MIR171d:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcag 83
||||||||||||||| |||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129
>40701_mtr-MIR171g:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcaga 38
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctca 82
||||||||||||| ||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>40698_mtr-MIR171d:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcaga 38
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctca 82
||||||||||||| ||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 tcatctgattgagccgtgtcaatatc 79
|||||||||||||||||| |||||||
Sbjct: 60 tcatctgattgagccgtgccaatatc 85
>42765_zma-MIR171e:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||| ||| ||||
Sbjct: 85 tctgattgagccgtgccaatatcttagtactct 117
>41985_osa-MIR171e:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||| ||| ||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctct 119
>41890_hvu-MIR171:mirbase
Length = 173
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||| ||| ||||
Sbjct: 110 tctgattgagccgtgccaatatcttagtgctct 142
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 catctgattgagccgtgtcaatatc 79
||||||||||||||||| |||||||
Sbjct: 110 catctgattgagccgtgccaatatc 134
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatct 80
||||||||||||||| ||||||||
Sbjct: 66 tctgattgagccgtgccaatatct 89
>41874_far-MIR171:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 87 atctgattgagccgtgccaatatc 110
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 66 atctgattgagccgtgccaatatc 89
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 65 atctgattgagccgtgccaatatc 88
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatct 80
||||||||||||||| ||||||||
Sbjct: 99 tctgattgagccgtgccaatatct 122
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 52 atctgattgagccgtgccaatatc 75
>40363_rco-MIR171e:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 56 atctgattgagccgtgccaatatc 79
>40361_rco-MIR171c:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatc 79
|||||||||||||||| |||||||
Sbjct: 59 atctgattgagccgtgccaatatc 82
