miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;EU549081.1/305-220 3702:Arabidopsis thaliana
(thale cress)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 6 gagtccctctgatattggcctggttcactcagattctcttttactaactcatctgattga 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagtccctctgatattggcctggttcactcagattctcttttactaactcatctgattga 60
Query: 66 gccgtgtcaatatctcagtcctctct 91
||||||||||||||||||||||||||
Sbjct: 61 gccgtgtcaatatctcagtcctctct 86
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 gagtccctctgatattggcctggttcactcagat 39
|||||||| |||||||||||||||||||||||||
Sbjct: 1 gagtccctttgatattggcctggttcactcagat 34
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatctcagtcctctct 91
|||||||||||||| | |||||||||||| ||||||
Sbjct: 79 atctgattgagccgcgccaatatctcagtactctct 114
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 gagtccctctgatattggcctggttcactcaga 38
||||| || ||||||||||||||||||||||||
Sbjct: 1 gagtcactatgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 111 tgattgagccgtgccaatatctcagt 136
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcagat 39
|||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagat 34
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 56 atctgattgagccgtgtcaatatctcagtcctctct 91
|||||||||||||| | |||||||||||| ||||||
Sbjct: 74 atctgattgagccgcgccaatatctcagtgctctct 109
>RF00643;MIR171_1;EU940714.1/212-315 4577:Zea mays
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||||||| ||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactct 102
>RF00643;MIR171_1;EU946837.1/362-465 4577:Zea mays
Length = 104
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||||||| ||||
Sbjct: 70 tctgattgagccgtgccaatatctcagtactct 102
>RF00643;MIR171_1;ABXC01000737.1/81777-81641 4558:Sorghum bicolor
(sorghum)
Length = 137
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcagtcctct 89
||||||||||||||| |||||||||||| ||||
Sbjct: 103 tctgattgagccgtgccaatatctcagtactct 135
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcagat 39
||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagat 24
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 93 tgattgagccgtgccaatatctcagt 118
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgatattggcctggttcactcaga 38
||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcaga 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 82 tgattgagccgtgccaatatctcagt 107
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago
truncatula (barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcaga 38
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gatattggcctggttcactcaga 38
|||||||||||||||||||||||
Sbjct: 11 gatattggcctggttcactcaga 33
>RF00643;MIR171_1;AAAA02030424.1/14947-15083 39946:Oryza sativa
Indica Group
Length = 137
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 tctgattgagccgtgtcaatatctcag 83
||||||||||||||| |||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 tcatctgattgagccgtgtcaatatc 79
|||||||||||||||||| |||||||
Sbjct: 51 tcatctgattgagccgtgccaatatc 76
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 tgattgagccgtgtcaatatctcagt 84
||||||||||||| ||||||||||||
Sbjct: 102 tgattgagccgtgccaatatctcagt 127
