miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46977_ath-miR171a:pmrd
Length = 123
Score = 244 bits (123), Expect = 1e-65
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 atgagagagtccctttgatattggcctggttcactcagatcttacctgaccacacacgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgagagagtccctttgatattggcctggttcactcagatcttacctgaccacacacgta 60
Query: 61 gatatacattattctctctagattatctgattgagccgcgccaatatctcagtactctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatatacattattctctctagattatctgattgagccgcgccaatatctcagtactctct 120
Query: 121 cgt 123
|||
Sbjct: 121 cgt 123
>46980_ath-miR171m:pmrd
Length = 92
Score = 182 bits (92), Expect = 4e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 17 gatattggcctggttcactcagatcttacctgaccacacacgtagatatacattattctc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatcttacctgaccacacacgtagatatacattattctc 60
Query: 77 tctagattatctgattgagccgcgccaatatc 108
||||||||||||||||||||||||||||||||
Sbjct: 61 tctagattatctgattgagccgcgccaatatc 92
>46975_ath-miR170m:pmrd
Length = 92
Score = 182 bits (92), Expect = 4e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 17 gatattggcctggttcactcagatcttacctgaccacacacgtagatatacattattctc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcactcagatcttacctgaccacacacgtagatatacattattctc 60
Query: 77 tctagattatctgattgagccgcgccaatatc 108
||||||||||||||||||||||||||||||||
Sbjct: 61 tctagattatctgattgagccgcgccaatatc 92
>48407_bra-miR171e:pmrd
Length = 119
Score = 91.7 bits (46), Expect = 1e-19
Identities = 100/112 (89%), Gaps = 7/112 (6%)
Strand = Plus / Plus
Query: 13 ctttgatattggcctggttcactcagatcttacctgaccacacacgtag-atatacatta 71
||||||||||||||||||||||||||||||| || || ||||||||| |||||||||
Sbjct: 14 ctttgatattggcctggttcactcagatctt-ccagattacacacgtactatatacatt- 71
Query: 72 ttctctctagattatctgattgagccgcgccaatatctcagtactctctcgt 123
||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 72 --ctctc-ag-ttatctgattgagccgcgccaatatctcagtgctctctcgt 119
>48368_bna-miR171f:pmrd
Length = 119
Score = 91.7 bits (46), Expect = 1e-19
Identities = 100/112 (89%), Gaps = 7/112 (6%)
Strand = Plus / Plus
Query: 13 ctttgatattggcctggttcactcagatcttacctgaccacacacgtag-atatacatta 71
||||||||||||||||||||||||||||||| || || ||||||||| |||||||||
Sbjct: 14 ctttgatattggcctggttcactcagatctt-ccagattacacacgtactatatacatt- 71
Query: 72 ttctctctagattatctgattgagccgcgccaatatctcagtactctctcgt 123
||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 72 --ctctc-ag-ttatctgattgagccgcgccaatatctcagtgctctctcgt 119
>48369_bna-miR171g:pmrd
Length = 115
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 83 ttatctgattgagccgcgccaatatctcagtactctctcgt 123
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 73 ttatctgattgagccgcgccaatatctcagtgctctctcgt 113
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 ctttgatattggcctggttcactcagat 40
||||||||||||||||||||||||||||
Sbjct: 17 ctttgatattggcctggttcactcagat 44
>55031_zma-miR171d:pmrd
Length = 121
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtactct 118
||||||||||||| |||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatctcagtactct 112
>54455_sbi-miR171d:pmrd
Length = 154
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtactct 118
||||||||||||| |||||||||||||||||||
Sbjct: 113 tctgattgagccgtgccaatatctcagtactct 145
>54551_sly-miR171a:pmrd
Length = 122
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ctttgatattggcctggttcactcaga 39
|||||||||||||||||||||||||||
Sbjct: 12 ctttgatattggcctggttcactcaga 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagt 113
||||||||||| ||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatctcagt 112
>48895_osa-miR171a:pmrd
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 84 tatctgattgagccgcgccaatatctc 110
|||||||||||||||||||||||||||
Sbjct: 63 tatctgattgagccgcgccaatatctc 89
>51692_ptc-miR171i:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 tgatattggcctggttcactcagatc 41
||||||||||||||||||||||||||
Sbjct: 10 tgatattggcctggttcactcagatc 35
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctcagtactc 117
||||||||||| ||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatctcagtactc 129
>55032_zma-miR171e:pmrd
Length = 126
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtactct 118
||||||||||||| |||||||||| ||||||||
Sbjct: 85 tctgattgagccgtgccaatatcttagtactct 117
>54458_sbi-miR171g:pmrd
Length = 77
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 tatctgattgagccgcgccaatatc 108
|||||||||||||||||||||||||
Sbjct: 53 tatctgattgagccgcgccaatatc 77
>46851_ace-miR171a:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctca 111
||||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctca 24
>46849_ace-miR170c:pmrd
Length = 55
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctca 111
||||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctca 24
>46847_ace-miR170a:pmrd
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctca 111
||||||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatctca 24
>55028_zma-miR171a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatc 108
|||||||||||||||||||||||
Sbjct: 77 tctgattgagccgcgccaatatc 99
>54832_vvi-miR171e:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatc 108
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatc 90
>48898_osa-miR171d:pmrd
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcag 112
||||||||||||| |||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatctcag 129
>48723_mtr-miR171g:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 gatattggcctggttcactcaga 39
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctca 111
||||||||||| ||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>48722_mtr-miR171d:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 gatattggcctggttcactcaga 39
|||||||||||||||||||||||
Sbjct: 6 gatattggcctggttcactcaga 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctca 111
||||||||||| ||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>48313_bdi-miR171d:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctc 110
|||||||||||||||||||||||
Sbjct: 81 tgattgagccgcgccaatatctc 103
>48311_bdi-miR171a:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatctc 110
|||||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatctc 72
>54461_sbi-miR171j:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctgattgagccgcgccaatatc 108
||||||||||||||||||||||
Sbjct: 82 ctgattgagccgcgccaatatc 103
>46853_ace-miR171c:pmrd
Length = 216
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctgattgagccgcgccaatatc 108
||||||||||||||||||||||
Sbjct: 195 ctgattgagccgcgccaatatc 216
>46852_ace-miR171b:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctgattgagccgcgccaatatc 108
||||||||||||||||||||||
Sbjct: 194 ctgattgagccgcgccaatatc 215
>46850_ace-miR170d:pmrd
Length = 215
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctgattgagccgcgccaatatc 108
||||||||||||||||||||||
Sbjct: 194 ctgattgagccgcgccaatatc 215
>55027_zma-miR170p:pmrd
Length = 62
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 42 tgattgagccgcgccaatatc 62
>54667_stu-miR171:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54666_stu-miR170:pmrd
Length = 124
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>54553_sly-miR171c:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>54451_sbi-miR170:pmrd
Length = 55
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 35 tgattgagccgcgccaatatc 55
>51342_ppd-miR170:pmrd
Length = 297
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 277 tgattgagccgcgccaatatc 297
>48899_osa-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatctcagtactct 118
||||||||||||| |||||||||| ||| ||||
Sbjct: 87 tctgattgagccgtgccaatatcttagtgctct 119
>48636_gra-miR171:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>48569_gma-miR171m:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>48484_gcl-miR171:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 185 tgattgagccgcgccaatatc 205
>46982_ath-miR171o:pmrd
Length = 339
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 319 tgattgagccgcgccaatatc 339
>46981_ath-miR171n:pmrd
Length = 461
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 1 tgattgagccgcgccaatatc 21
>46976_ath-miR170n:pmrd
Length = 172
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 152 tgattgagccgcgccaatatc 172
>46848_ace-miR170b:pmrd
Length = 76
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 tgattgagccgcgccaatatc 108
|||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76
>54910_zel-miR171:pmrd
Length = 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 2 gattgagccgcgccaatatc 21
>54836_vvi-miR171i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 66 atctgattgagccgtgccaatatc 89
>54833_vvi-miR171f:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>54828_vvi-miR171a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 65 atctgattgagccgtgccaatatc 88
>54554_sly-miR171d:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>54460_sbi-miR171i:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatct 109
||||||||||||| ||||||||||
Sbjct: 66 tctgattgagccgtgccaatatct 89
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 57 atctgattgagccgtgccaatatc 80
>52488_ptc-miRf10666-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>52331_ptc-miRf10509-akr:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>51694_ptc-miR171k:pmrd
Length = 78
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>51691_ptc-miR171h:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>51690_ptc-miR171g:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 68 atctgattgagccgtgccaatatc 91
>51689_ptc-miR171f:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tctgattgagccgcgccaatatct 109
||||||||||||| ||||||||||
Sbjct: 99 tctgattgagccgtgccaatatct 122
>51688_ptc-miR171e:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 62 atctgattgagccgtgccaatatc 85
>51687_ptc-miR171d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>51686_ptc-miR171c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>51383_ppt-miR171b:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>51382_ppt-miR171a:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
>48497_ghr-miR171:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 gattgagccgcgccaatatc 108
||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85
>46877_aqc-miR171b:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 85 atctgattgagccgcgccaatatc 108
|||||||||||||| |||||||||
Sbjct: 52 atctgattgagccgtgccaatatc 75
