miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 244 bits (123), Expect = 2e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 6 ctgttcgctgttggagcatcatcaagattcacaaatcatcaagtattcgtgtaaataaac 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgttcgctgttggagcatcatcaagattcacaaatcatcaagtattcgtgtaaataaac 60
Query: 66 ccatttatgattagatttttgatgtatgtatgagaatcttgatgatgctgcagctgcaat 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatttatgattagatttttgatgtatgtatgagaatcttgatgatgctgcagctgcaat 120
Query: 126 cag 128
|||
Sbjct: 121 cag 123
>RF00452;mir-172;CR954190.2/85410-85533 3880:Medicago truncatula
(barrel medic)
Length = 124
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 94 tatgagaatcttgatgatgctgcagctgcaat 125
|||||||||| |||||||||||||||||||||
Sbjct: 90 tatgagaatcctgatgatgctgcagctgcaat 121
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 6 ctgttcgctgttggagcatcatcaagattcacaaa 40
||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ctgtttgctgatggagcatcatcaagattcacaaa 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 94 tatgagaatcttgatgatgctgcagctgcaat 125
|||| ||||||||||||||||||||| |||||
Sbjct: 122 tatgggaatcttgatgatgctgcagcggcaat 153
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgcagctgcaat 125
|||||||||||||||||||||||| |||||
Sbjct: 81 tgagaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgcagctgcaatca 127
||||||||||||||||||||||| | |||||||
Sbjct: 83 atgagaatcttgatgatgctgcatcggcaatca 115
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tgttcgctgttggagcatcatcaagattcacaa 39
|||| |||| |||||||||||||||||||||||
Sbjct: 2 tgtttgctggtggagcatcatcaagattcacaa 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgcag 118
|||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgcag 122
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tggagcatcatcaagattcacaaa 40
||||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaaa 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 94 tatgagaatcttgatgatgctgcagctgcaat 125
|||| ||||||||||||||||||||| |||||
Sbjct: 167 tatgggaatcttgatgatgctgcagcggcaat 198
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 tatgagaatcttgatgatgctgca 117
||||||||||||||||||||||||
Sbjct: 81 tatgagaatcttgatgatgctgca 104
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 tatgagaatcttgatgatgctgca 117
||||||||||||||||||||||||
Sbjct: 75 tatgagaatcttgatgatgctgca 98
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 tatgagaatcttgatgatgctgca 117
||||||||||||||||||||||||
Sbjct: 109 tatgagaatcttgatgatgctgca 132
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 140 atgagaatcttgatgatgctgca 162
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tggagcatcatcaagattcacaa 39
|||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 gaatcttgatgatgctgcagctgcaat 125
||||||||||||||||||||| |||||
Sbjct: 115 gaatcttgatgatgctgcagcggcaat 141
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 135 atgagaatcttgatgatgctgca 157
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgca 101
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tggagcatcatcaagattcacaa 39
|||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 gaatcttgatgatgctgcagctgcaat 125
||||||||||||||||||||| |||||
Sbjct: 111 gaatcttgatgatgctgcagcggcaat 137
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 78 atgagaatcttgatgatgctgca 100
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 115 atgagaatcttgatgatgctgca 137
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 106 atgagaatcttgatgatgctgca 128
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 78 atgagaatcttgatgatgctgca 100
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 89 atgagaatcttgatgatgctgca 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 99 gaatcttgatgatgctgcagctgcaa 124
||||||||||||||||||| ||||||
Sbjct: 30 gaatcttgatgatgctgcacctgcaa 5
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atgagaatcttgatgatgctgca 117
|||||||||||||||||||||||
Sbjct: 79 atgagaatcttgatgatgctgca 101
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 181 tgagaatcttgatgatgctgca 202
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 99 gaatcttgatgatgctgcagctgcaa 124
||||||||||||||||||| ||||||
Sbjct: 30 gaatcttgatgatgctgcacctgcaa 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 98 tgagaatcttgatgatgctgca 119
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tggagcatcatcaagattcaca 38
||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcaca 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 109 tgagaatcttgatgatgctgca 130
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 99 gaatcttgatgatgctgcagctgcaa 124
||||||||||||||||||| ||||||
Sbjct: 30 gaatcttgatgatgctgcacctgcaa 5
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgca 118
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 130 tgagaatcttgatgatgctgca 151
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 127 tgagaatcttgatgatgctgca 148
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 128 tgagaatcttgatgatgctgca 149
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 58 tgagaatcttgatgatgctgca 79
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 129 tgagaatcttgatgatgctgca 150
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgca 110
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgca 109
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 tgtatgtatgagaatcttgatgatgctgca 117
||||||| || |||||||||||||||||||
Sbjct: 115 tgtatgtgtgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 tgtatgtatgagaatcttgatgatgctgca 117
||||||| || |||||||||||||||||||
Sbjct: 113 tgtatgtgtgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 88 tgtatgtatgagaatcttgatgatgctgca 117
||||||| || |||||||||||||||||||
Sbjct: 150 tgtatgtgtgggaatcttgatgatgctgca 179
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tgagaatcttgatgatgctgca 117
||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgca 98