miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 349 bits (176), Expect = 8e-96
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 1 agagagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 agagagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactc 67
Query: 61 attcatccaaataccgagtcgccaaaattcaaactagactcgttaaatgaatgaatgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 attcatccaaataccgagtcgccaaaattcaaactagactcgttaaatgaatgaatgatg 127
Query: 121 cggtagacaaattggatcattgattctctttgattggactgaagggagctccctct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 cggtagacaaattggatcattgattctctttgattggactgaagggagctccctct 183
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 285 bits (144), Expect = 1e-76
Identities = 168/176 (95%)
Strand = Plus / Plus
Query: 1 agagagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactc 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8 agagagagcttccttgagtccattcacaggtcgtgatatgatccaattagcttccgactc 67
Query: 61 attcatccaaataccgagtcgccaaaattcaaactagactcgttaaatgaatgaatgatg 120
|||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||| |
Sbjct: 68 attcatccaaataccgagtcaccaaaattcgagcaagactcgttaaatgaatgaatgaag 127
Query: 121 cggtagacaaattggatcattgattctctttgattggactgaagggagctccctct 176
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 128 cggtagacaaattgggtcattgattctctatgattggactgaagggagctccctct 183
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 278 bits (140), Expect = 2e-74
Identities = 167/175 (95%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 2 gagagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactca 61
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 9 gagagagcttccttgagtccattcacaggtcgtgatatgatccaattagcttccgactca 68
Query: 62 ttcatccaaataccgagtcgc--caaaattcaaactagactcgttaaatgaatgaatgat 119
||||||||||||||||||| | ||||||| ||| ||||| ||||||||||||||||||
Sbjct: 69 ttcatccaaataccgagtctcaccaaaattggaacaagacttgttaaatgaatgaatgat 128
Query: 120 gcggtagacaaattggatcattgattctctttgattggactgaagggagctccct 174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gcggtagacaaattggatcattgattctctttgattggactgaagggagctccct 183
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 264 bits (133), Expect = 4e-70
Identities = 163/173 (94%)
Strand = Plus / Plus
Query: 4 gagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcatt 63
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 11 gagagcttccttgagtccattcacaggtcgtgatatgatccaattagcttccgactcatt 70
Query: 64 catccaaataccgagtcgccaaaattcaaactagactcgttaaatgaatgaatgatgcgg 123
||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||
Sbjct: 71 catccaaataccgagtcagggaaatttgatctatactcgttaaatgaatgaatgatgcgg 130
Query: 124 tagacaaattggatcattgattctctttgattggactgaagggagctccctct 176
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 131 tagacaaattggatcattgattctctctgattggactgaagggagctccctct 183
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 256 bits (129), Expect = 9e-68
Identities = 162/173 (93%)
Strand = Plus / Plus
Query: 3 agagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcat 62
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct: 10 agagagcttccttgagtccattcacaggttgtgatatgatccaattagcttccgaatcat 69
Query: 63 tcatccaaataccgagtcgccaaaattcaaactagactcgttaaatgaatgaatgatgcg 122
|||||||||||| ||||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 70 tcatccaaatactgagtcaccaaaattcaaactaaactcgttaaatgaatgtatgatgcg 129
Query: 123 gtagacaaattggatcattgattctctttgattggactgaagggagctccctc 175
||||||||||||| | ||||||||||| ||||||||||||||| |||||||||
Sbjct: 130 gtagacaaattgggttattgattctctatgattggactgaaggtagctccctc 182
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 3 agagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcat 62
||||||||| ||| |||||||||| ||| || ||| || |||||||||| |||||||||
Sbjct: 10 agagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcat 69
Query: 63 tcatccaaat 72
||||||||||
Sbjct: 70 tcatccaaat 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 62/72 (86%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 104 taaatgaatgaatgatgcggtagacaaattggatcat-tgattctctttgattggactga 162
||||||| |||||||||||| |||||||||| ||| | | ||| || | ||||||||||
Sbjct: 97 taaatgagtgaatgatgcgggagacaaattgtatcttaagcttc-ctgttattggactga 155
Query: 163 agggagctccct 174
||||||||||||
Sbjct: 156 agggagctccct 167
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
||||||||||||||||||| |||||||||| || | |||||| || ||||||||||
Sbjct: 111 taaatgaatgaatgatgcgagagacaaattgagtcttcacttctctatgcttggactgaa 170
Query: 164 gggagctccct 174
|||||||||||
Sbjct: 171 gggagctccct 181
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 61.9 bits (31), Expect = 3e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
||||||| |||||||||||| |||||||||||||| | || || || ||||||||||
Sbjct: 102 taaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactgaa 161
Query: 164 gggagctccct 174
|||||||||||
Sbjct: 162 gggagctccct 172
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 58.0 bits (29), Expect = 4e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 3 agagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcat 62
||||||||| ||| |||||| ||| ||| || || |||| |||||||| |||||||||
Sbjct: 9 agagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcat 68
Query: 63 tcatccaaataccgagt 79
|||||||||||| ||||
Sbjct: 69 tcatccaaatactgagt 85
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 104 taaatgaatgaatgatgcggtagacaaattg 134
||||||| |||||||||||| ||||||||||
Sbjct: 109 taaatgagtgaatgatgcgggagacaaattg 139
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 58.0 bits (29), Expect = 4e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 3 agagagcttccttgagtccattcacaggtcgtgatatgattcaattagcttccgactcat 62
||||||||| ||| |||||| ||| ||| | | || |||| |||||||| |||||||||
Sbjct: 10 agagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcat 69
Query: 63 tcatccaaataccgagt 79
|||||||||||| ||||
Sbjct: 70 tcatccaaatactgagt 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 104 taaatgaatgaatgatgcggtagacaaattg 134
||||||| |||||||||||| ||||||||||
Sbjct: 142 taaatgagtgaatgatgcgggagacaaattg 172
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus
trichocarpa
Length = 188
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 36 atatgattcaattagcttccgactcattcatccaaataccgagt 79
|||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct: 43 atatgatttaattagttaccgactcattcatccaaatactgagt 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 104 taaatgaatgaatgatgcggtagacaaattggatcattgattctctttgattggactgaa 163
||||||||||| |||||||| ||||||||| ||| | | | || | |||||||||||
Sbjct: 107 taaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactgaa 166
Query: 164 gggagctccct 174
|||||||||||
Sbjct: 167 gggagctccct 177
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 147 tctttgattggactgaagggagctccct 174
|||||| |||||||||||||||||||||
Sbjct: 153 tctttgcttggactgaagggagctccct 180
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 147 tctttgattggactgaagggagctccct 174
|||||| |||||||||||||||||||||
Sbjct: 160 tctttgcttggactgaagggagctccct 187
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 144 ttctctttgattggactgaagggagctccct 174
|||||| || |||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctccct 173
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 144 ttctctttgattggactgaagggagctccct 174
|||||| || |||||||||||||||||||||
Sbjct: 159 ttctctgtgcttggactgaagggagctccct 189
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 42 ttcaattagcttccgactcattcatccaaat 72
||||||||||| | |||||||||||||||||
Sbjct: 50 ttcaattagctgctgactcattcatccaaat 80
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 105 aaatgaatgaatgatgcggtagacaaattg 134
|||||| |||||||||||| ||||||||||
Sbjct: 114 aaatgagtgaatgatgcgggagacaaattg 143
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 42 ttcaattagcttccgactcattcatccaaat 72
||||||| ||| |||||||||||||||||||
Sbjct: 37 ttcaatttgctgccgactcattcatccaaat 67
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 200 ttggactgaagggagctccctc 221
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 154 ttggactgaagggagctccctc 175
||||||||||||||||||||||
Sbjct: 160 ttggactgaagggagctccctc 181
