miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46994_ath-miR319c:pmrd
Length = 199
Score = 394 bits (199), Expect = e-111
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagatatagaaggagattctttcagtccagtcatggatagaaaaagaagagggtagaaat 60
Query: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgataaatttaaaccgcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctgccgactcatccatccaaacactcgtggtagagaaacgataaatttaaaccgcagt 120
Query: 121 gactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gactgtgtgaatgatgcgggagatatttttgatccttctttatctgtgtttggactgaag 180
Query: 181 ggagctccttctttttcta 199
|||||||||||||||||||
Sbjct: 181 ggagctccttctttttcta 199
>51713_ptc-miR319g:pmrd
Length = 204
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| ||||| || || |||||| |||||||
Sbjct: 123 gtgattgtgtgaatgatgcgggagataattttccatcctctccttttctgtgcttggact 182
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 183 gaagggagctccttc 197
>51712_ptc-miR319f:pmrd
Length = 202
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| |||| ||||| |||||| |||||||
Sbjct: 121 gtgattgtgtgaatgatgcgggagataattttacatcccctctttttctgtgcttggact 180
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 181 gaagggagctccttc 195
>51709_ptc-miR319c:pmrd
Length = 196
Score = 69.9 bits (35), Expect = 7e-13
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| |||||||||||||||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 116 gtgaatgtgtgaatgatgcgggagataaatttcatccttttcttctctgtgcttggactg 175
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 176 aagggagctcc 186
>51351_ppl-miR319:pmrd
Length = 204
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttg-atcct-tctttatctgtgtttggact 176
|||| |||||||||||||||||||||| |||| |||| ||||| |||||| |||||||
Sbjct: 121 gtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgcttggact 180
Query: 177 gaagggagctccttc 191
|||||||||||||||
Sbjct: 181 gaagggagctccttc 195
>54846_vvi-miR319f:pmrd
Length = 193
Score = 61.9 bits (31), Expect = 2e-10
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||||||||||| || ||| |||||| | || |||||| ||||||||
Sbjct: 110 gtgaatgtgtgaatgatgcgggaggtaaatttcatccttttcttgtctgtgcttggactg 169
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 170 aagggagctcc 180
>48574_gma-miR319c:pmrd
Length = 221
Score = 60.0 bits (30), Expect = 7e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 157 tctttatctgtgtttggactgaagggagctccttctttttct 198
||||| |||||| |||||||||| ||||||||||||||||||
Sbjct: 170 tctttctctgtgcttggactgaaaggagctccttctttttct 211
>51710_ptc-miR319d:pmrd
Length = 193
Score = 54.0 bits (27), Expect = 4e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 113 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 172
Query: 178 aagggagctcc 188
|||||||||||
Sbjct: 173 aagggagctcc 183
>54380_pvu-miR319c:pmrd
Length = 734
Score = 52.0 bits (26), Expect = 2e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 157 tctttatctgtgtttggactgaagggagctccttcttt 194
||||| |||| | |||||||||||||||||||||||||
Sbjct: 397 tctttctctgagcttggactgaagggagctccttcttt 434
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 52.0 bits (26), Expect = 2e-07
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 119 gtgactgtgtgaatgatgcgggagatatttttgatccttct-ttatctgtgtttggactg 177
|||| ||||||||||| ||||||||| ||| |||||| | || |||||| ||||||||
Sbjct: 101 gtgaatgtgtgaatgacgcgggagattaatttcatccttttcttctctgtgcttggactg 160
Query: 178 aagggagctc 187
||||||||||
Sbjct: 161 aagggagctc 170
>54845_vvi-miR319e:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 tttggactgaagggagctcct 189
|||||||||||||||||||||
Sbjct: 76 tttggactgaagggagctcct 96
>54844_vvi-miR319c:pmrd
Length = 182
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 164 ctgtgtttggactgaagggagctcc 188
||||| |||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctcc 169
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctccttctttttct 198
||||||||||||||||||| ||| |||||
Sbjct: 161 ttggactgaagggagctccctctctttct 189
>46863_aqc-miR159:pmrd
Length = 71
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 tgtttggactgaagggagctc 187
|||||||||||||||||||||
Sbjct: 48 tgtttggactgaagggagctc 68
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 170 ttggactgaagggagctcct 189
||||||||||||||||||||
Sbjct: 141 ttggactgaagggagctcct 160
