miRNEST 2.0, an integrative microRNA resource :: BLAST
>39862_aly-MIR390a:mirbase
Length = 129
Score = 165 bits (83), Expect = 8e-42
Identities = 101/107 (94%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 12 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcttatttcatatcg 71
Query: 61 attttttggcgctatccatcctgagtttcattggctcttcttactac 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 attttttggcgctatccatcctgagtttcattggctcttcttactac 118
>40293_bna-MIR390b:mirbase
Length = 105
Score = 131 bits (66), Expect = 1e-31
Identities = 99/108 (91%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacac---atcg 57
Query: 61 at-tttttggcgctatccatcctgagtttcattggctcttcttactac 107
|| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 58 atatttttggcgctgtccatcctgagtttcattggctcttcttactac 105
>40468_gma-MIR390a:mirbase
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatg 34
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcat 89
>40467_gma-MIR390a:mirbase
Length = 105
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatg 34
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcat 89
>40294_bna-MIR390c:mirbase
Length = 128
Score = 67.9 bits (34), Expect = 1e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatga 42
||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gtagagaagtagctgtaaagctcaggagggatagcgccatga 47
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtt 87
|||||||||||||||||||||
Sbjct: 83 tggcgctatccatcctgagtt 103
>41237_csi-MIR390:mirbase
Length = 154
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 5 agaagaatctgtaaagctcaggagggatagcgccatg 41
|||||||||||| ||||||||||||||||||||||||
Sbjct: 8 agaagaatctgttaagctcaggagggatagcgccatg 44
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttcattggctcttcttact 105
||||||||||||||||||||||||| | ||||||||||
Sbjct: 96 tggcgctatccatcctgagtttcatggcttcttcttact 134
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 65.9 bits (33), Expect = 6e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccat 40
|||||||||||||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttcattggctcttc 100
|||||||||| |||||||||||||| || |||||
Sbjct: 77 tggcgctatctatcctgagtttcatgggttcttc 110
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgttaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
||||||||||||||||||||||| || |||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttctt 127
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgccatg 38
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
||||||||||||||||||||||| || |||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>41640_vvi-MIR390:mirbase
Length = 140
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatga 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttca 90
|||||||||| |||||||||||||
Sbjct: 107 tggcgctatctatcctgagtttca 130
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatga 35
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatg 41
||||||||| ||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttcat 109
>40292_bna-MIR390a:mirbase
Length = 144
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccatg 41
|||||| | |||||||||||||||||||||||||||||
Sbjct: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ttggcgctatccatcctgagtt 87
||||||||||||||||||||||
Sbjct: 92 ttggcgctatccatcctgagtt 113
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 atctgtaaagctcaggagggatagcgccatga 42
|||||| |||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatga 35
>40469_gma-MIR390b:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagc 35
||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcc 38
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagttt 88
||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagttt 98
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcc 38
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttcattg 93
|||||||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtttcattg 103
>39863_aly-MIR390b:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 taaagctcaggagggatagcgccatga 42
|||||||||||||||||||||||||||
Sbjct: 17 taaagctcaggagggatagcgccatga 43
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ttggcgctatccatcctgagtt 87
||||||||||||||||||||||
Sbjct: 88 ttggcgctatccatcctgagtt 109
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
||||||||||||||||||||||| || |||||||
Sbjct: 88 gcgctatccatcctgagtttcatcggttcttctt 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ctgtaaagctcaggagggatagcgccat 40
|||| |||||||||||||||||||||||
Sbjct: 16 ctgttaagctcaggagggatagcgccat 43
>40372_rco-MIR390b:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattgg 94
||||||||||||||||||||||||||
Sbjct: 96 gcgctatccatcctgagtttcattgg 121
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatg 41
||||||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgccatg 29
>40073_ath-MIR390b:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 taaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ttggcgctatccatcctgagtt 87
||||||||||||||||||||||
Sbjct: 84 ttggcgctatccatcctgagtt 105
>40705_mtr-MIR390:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ctgtaaagctcaggagggatagcgccat 40
|||| |||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagtttcat 98
>40371_rco-MIR390a:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 13 ctgtaaagctcaggagggatagcgccatgatgatca 48
|||| ||||||||||||||||||||| ||| |||||
Sbjct: 1 ctgttaagctcaggagggatagcgccgtgaagatca 36
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttca 90
||||||||||||||||||||||||
Sbjct: 80 tggcgctatccatcctgagtttca 103
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccat 40
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 agctcaggagggatagcgcc 38
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
