miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
Query: 61 attttttggcgctatccatcctgagtttcattggctcttcttactac 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attttttggcgctatccatcctgagtttcattggctcttcttactac 107
>46995_ath-miR390a:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
Query: 61 attttttggcgctatccatcctgagtttcattggctcttcttactac 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attttttggcgctatccatcctgagtttcattggctcttcttactac 107
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatgatgatcacattcgttatctattttttggcgctatcc 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatgatgatcacattcgttatctattttttggcgctatcc 60
Query: 78 atcctgagttt 88
|||||||||||
Sbjct: 61 atcctgagttt 71
>48371_bna-miR390b:pmrd
Length = 105
Score = 131 bits (66), Expect = 1e-31
Identities = 99/108 (91%), Gaps = 4/108 (3%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatct 60
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacac---atcg 57
Query: 61 at-tttttggcgctatccatcctgagtttcattggctcttcttactac 107
|| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 58 atatttttggcgctgtccatcctgagtttcattggctcttcttactac 105
>48372_bna-miR390c:pmrd
Length = 128
Score = 67.9 bits (34), Expect = 1e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1 gtagagaagaatctgtaaagctcaggagggatagcgccatga 42
||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gtagagaagtagctgtaaagctcaggagggatagcgccatga 47
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtt 87
|||||||||||||||||||||
Sbjct: 83 tggcgctatccatcctgagtt 103
>48499_ghr-miR390b:pmrd
Length = 132
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 6 gaagaatctgttaagctcaggagggatagcgccatg 41
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
||||||||||||||||||||||| || |||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttctt 127
>48498_ghr-miR390a:pmrd
Length = 124
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
||||||||||| ||||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgccatg 38
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
||||||||||||||||||||||| || |||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>54848_vvi-miR390:pmrd
Length = 140
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatga 35
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttca 90
|||||||||| |||||||||||||
Sbjct: 107 tggcgctatctatcctgagtttca 130
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 4 agaatctgttaagctcaggagggatagcgccatga 38
>51716_ptc-miR390a:pmrd
Length = 119
Score = 61.9 bits (31), Expect = 9e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatga 35
>48500_ghr-miR390c:pmrd
Length = 114
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatg 41
||||||||| ||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttcat 109
>48370_bna-miR390a:pmrd
Length = 144
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccatg 41
|||||| | |||||||||||||||||||||||||||||
Sbjct: 19 gagaagtagctgtaaagctcaggagggatagcgccatg 56
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ttggcgctatccatcctgagtt 87
||||||||||||||||||||||
Sbjct: 92 ttggcgctatccatcctgagtt 113
>51718_ptc-miR390c:pmrd
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 atctgtaaagctcaggagggatagcgccatga 42
|||||| |||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatga 35
>48575_gma-miR390b:pmrd
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagc 35
||||||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
>51719_ptc-miR390d:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcc 38
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagttt 88
||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagttt 98
>51717_ptc-miR390b:pmrd
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcc 38
||||||||| |||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttcattg 93
|||||||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtttcattg 103
>46996_ath-miR390b:pmrd
Length = 120
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 taaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ttggcgctatccatcctgagtt 87
||||||||||||||||||||||
Sbjct: 84 ttggcgctatccatcctgagtt 105
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccat 40
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccat 40
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagttt 88
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagttt 88
||||||||||||||||||||||
Sbjct: 70 tggcgctatccatcctgagttt 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgcc 24
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgcc 38
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 agctcaggagggatagcgcc 38
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19 agctcaggagggatagcgcc 38
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
