miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana (thale
cress)
Length = 99
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatctatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatctatt 60
Query: 64 ttttggcgctatccatcctgagtttcattggctcttctt 102
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttggcgctatccatcctgagtttcattggctcttctt 99
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 115 bits (58), Expect = 1e-25
Identities = 91/100 (91%), Gaps = 4/100 (4%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccatgatgatcacattcgttatctat- 62
||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||
Sbjct: 1 gagaagaatctgtaaagctcaggagggatagcgccatcatgatcacacac---atcgata 57
Query: 63 tttttggcgctatccatcctgagtttcattggctcttctt 102
||||||||||| ||||||||||||||||||||||||||||
Sbjct: 58 tttttggcgctgtccatcctgagtttcattggctcttctt 97
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 75.8 bits (38), Expect = 1e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 5 agaagaatctgtaaagctcaggagggatagcgccatga 42
||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agaagaatctgtaaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgtaaagctcaggagggatagcgccatg 38
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagtttcat 93
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccatg 41
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gagaagaatctgttaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttca 90
||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttca 87
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 61.9 bits (31), Expect = 2e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 4 gagaagaatctgtaaagctcaggagggatagcgccatga 42
|||||| | ||||||||||||||||||||||||||||||
Sbjct: 1 gagaagtagctgtaaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatga 39
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgccatga 42
||||||||| |||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
|||||||||||||||||||||||||| |||||||
Sbjct: 105 gcgctatccatcctgagtttcattggttcttctt 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 aagctcaggagggatagcgccatg 41
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 7 aagaatctgtaaagctcaggagggatagcgccat 40
|||||||||| |||||||||||||||||||||||
Sbjct: 4 aagaatctgttaagctcaggagggatagcgccat 37
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcat 91
|||||||||||||||||||||||
Sbjct: 85 gcgctatccatcctgagtttcat 107
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 69 gcgctatccatcctgagtttcattggctcttctt 102
|||||||||||||||||||||||||| |||||||
Sbjct: 92 gcgctatccatcctgagtttcattggttcttctt 125
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 agaatctgtaaagctcaggagggatagcgcca 39
||||||||| ||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcca 36
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 6 gaagaatctgtaaagctcaggagggatagcgcc 38
||||||||||| |||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgcc 35
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttcattggctcttctt 102
|||||||||||||||||||||| | ||| |||||||
Sbjct: 81 tggcgctatccatcctgagttttactggttcttctt 116
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 atctgtaaagctcaggagggatagcgccatga 42
|||||| |||||||||||||||||||||||||
Sbjct: 8 atctgttaagctcaggagggatagcgccatga 39
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 16 taaagctcaggagggatagcgccatg 41
||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 ttggcgctatccatcctgagtt 87
||||||||||||||||||||||
Sbjct: 84 ttggcgctatccatcctgagtt 105
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 50.1 bits (25), Expect = 6e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 12 tctgtaaagctcaggagggatagcgccatgatgatca 48
||||| ||||||||||||||||||||| ||| |||||
Sbjct: 9 tctgttaagctcaggagggatagcgccgtgaagatca 45
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tggcgctatccatcctgagtttca 90
||||||||||||||||||||||||
Sbjct: 89 tggcgctatccatcctgagtttca 112
