miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46996_ath-miR390b:pmrd
Length = 120
Score = 238 bits (120), Expect = 8e-64
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gagaaatagctataaagctcaggagggatagcgccatggctcaccagtgctgtatgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctcaccagtgctgtatgtttt 60
Query: 61 gtatatgcgtacatgtatatctgttggcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatatgcgtacatgtatatctgttggcgctatccatcctgagttccatagcttcttctt 120
>48370_bna-miR390a:pmrd
Length = 144
Score = 65.9 bits (33), Expect = 6e-12
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1 gagaaatagctataaagctcaggagggatagcgccatggctcacc 45
||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct: 19 gagaagtagctgtaaagctcaggagggatagcgccatgtctcacc 63
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 84 ttggcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||||||| || ||||||||||
Sbjct: 92 ttggcgctatccatcctgagttctatggcttcttctt 128
>48372_bna-miR390c:pmrd
Length = 128
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 85 tggcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||||||||| ||||||||||
Sbjct: 83 tggcgctatccatcctgagttccatggcttcttctt 118
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1 gagaaatagctataaagctcaggagggatagcgccatggctca 43
||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 9 gagaagtagctgtaaagctcaggagggatagcgccatgactca 51
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||
Sbjct: 16 taaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 ttggcgctatccatcctgagtt 105
||||||||||||||||||||||
Sbjct: 66 ttggcgctatccatcctgagtt 87
>46995_ath-miR390a:pmrd
Length = 107
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||
Sbjct: 16 taaagctcaggagggatagcgccatg 41
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 ttggcgctatccatcctgagtt 105
||||||||||||||||||||||
Sbjct: 66 ttggcgctatccatcctgagtt 87
>48500_ghr-miR390c:pmrd
Length = 114
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatgg 39
|||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatgg 35
>48499_ghr-miR390b:pmrd
Length = 132
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatgg 39
|||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatgg 42
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||| ||| | ||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttctt 127
>48498_ghr-miR390a:pmrd
Length = 124
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatgg 39
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||| ||| | ||||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>48371_bna-miR390b:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccat 37
|||||||||||||||||||||||||
Sbjct: 16 taaagctcaggagggatagcgccat 40
>54848_vvi-miR390:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 14 aagctcaggagggatagcgccatg 37
>51718_ptc-miR390c:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>51716_ptc-miR390a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 ttggcgctatccatcctgagtt 105
||||||||||||||||||||||
Sbjct: 49 ttggcgctatccatcctgagtt 70
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccat 37
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccat 37
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
>51717_ptc-miR390b:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 85 tggcgctatccatcctgagttccatagctt 114
||||||||||||||||||||| ||| ||||
Sbjct: 77 tggcgctatccatcctgagtttcattgctt 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgcc 24
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 tggcgctatccatcctgagtt 105
|||||||||||||||||||||
Sbjct: 70 tggcgctatccatcctgagtt 90
>51719_ptc-miR390d:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 85 tggcgctatccatcctgagtt 105
|||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagtt 97
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcc 35
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 agctcaggagggatagcgcc 35
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 agctcaggagggatagcgcc 35
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>48575_gma-miR390b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagc 32
||||||||||||||||||||
Sbjct: 9 taaagctcaggagggatagc 28
