miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 238 bits (120), Expect = 1e-62
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 1 gagaaatagctataaagctcaggagggatagcgccatggctcaccagtgctgtatgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaaatagctataaagctcaggagggatagcgccatggctcaccagtgctgtatgtttt 60
Query: 61 gtatatgcgtacatgtatatctgttggcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatatgcgtacatgtatatctgttggcgctatccatcctgagttccatagcttcttctt 120
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 85 tggcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||||||||| ||||||||||
Sbjct: 75 tggcgctatccatcctgagttccatggcttcttctt 110
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 1 gagaaatagctataaagctcaggagggatagcgccatggctca 43
||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 gagaagtagctgtaaagctcaggagggatagcgccatgactca 43
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccatgg 39
|||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttct 116
||||||||||||||||||| ||| ||||||
Sbjct: 71 gcgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatggc 40
||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggc 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||| || ||||||||||
Sbjct: 66 gcgctatccatcctgagtttcactgcttcttctt 99
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatg 38
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccatg 38
||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatg 38
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 ttggcgctatccatcctgagtt 105
||||||||||||||||||||||
Sbjct: 63 ttggcgctatccatcctgagtt 84
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 taaagctcaggagggatagcgccat 37
|||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccat 37
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatgg 39
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||| ||| | ||||||||
Sbjct: 105 gcgctatccatcctgagtttcattggttcttctt 138
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 tggcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||||| || || ||||||||
Sbjct: 89 tggcgctatccatcctgagtttcacaggttcttctt 124
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttcttc 118
||||||||||||||||||| ||| ||||||||
Sbjct: 85 gcgctatccatcctgagtttcatggcttcttc 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccat 37
|||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccat 37
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgccatg 38
||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatg 38
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aagctcaggagggatagcgcca 36
||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcca 36
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 gcgctatccatcctgagttccatagcttcttctt 120
||||||||||||||||||| ||| | ||||||||
Sbjct: 92 gcgctatccatcctgagtttcattggttcttctt 125
