miRNEST 2.0, an integrative microRNA resource :: BLAST
>39866_aly-MIR393b:mirbase
Length = 169
Score = 115 bits (58), Expect = 1e-26
Identities = 137/164 (83%), Gaps = 13/164 (7%)
Strand = Plus / Plus
Query: 1 agagaaaggatccaaagggatcgcattgatcctaattaagctgatttattccccaataat 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8 agagaaagcatccaaagggatcgcattgatcctaattaagctgatttattccccaatatt 67
Query: 61 tgnnnnnnnnnnccttctcaatcgaaagatgg----aagaaaaacaaattccaaacattt 116
| | |||| ||||||| ||| || ||||| |||||| ||||| ||
Sbjct: 68 ttattt--------tcctcattcgaaagttggagaaaaaaaaaaaaaattctaaaca-tt 118
Query: 117 tgcttacttttccggatcatgcgatctctttggattcattcttt 160
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tgctttcttttccggatcatgcgatctctttggattcattcttt 162
>40295_bna-MIR393:mirbase
Length = 127
Score = 77.8 bits (39), Expect = 2e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatcctaattaagctgatttattccccaataatt 61
|||||||||||||||||||||||||| ||||||| |||||||| |||||||
Sbjct: 1 tccaaagggatcgcattgatcctaatcaagctgagttattcccgaataatt 51
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 113 attttgcttacttttccggatcatgcgatctctt 146
||||||||| |||||||||||||||||||||||
Sbjct: 90 attttgcttcgttttccggatcatgcgatctctt 123
>40075_ath-MIR393a:mirbase
Length = 133
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 1 agagaaaggatccaaagggatcgcattgatcctaattaag 40
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 agaggaaggatccaaagggatcgcattgatcctaattaag 40
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 130 ggatcatgcgatctctttggattcat 155
||||||||| ||||||||||||||||
Sbjct: 103 ggatcatgctatctctttggattcat 128
>39865_aly-MIR393a:mirbase
Length = 147
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 1 agagaaaggatccaaagggatcgcattgatcctaat 36
|||| |||||||||||||||||||||||||||||||
Sbjct: 8 agaggaaggatccaaagggatcgcattgatcctaat 43
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 130 ggatcatgcgatctctttggattcat 155
||||||||| ||||||||||||||||
Sbjct: 110 ggatcatgctatctctttggattcat 135
>41238_csi-MIR393:mirbase
Length = 145
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcctaa 35
||||||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatcctaa 45
>40706_mtr-MIR393:mirbase
Length = 135
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatccta 34
|||||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatccta 44
>41997_osa-MIR393:mirbase
Length = 115
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcct 33
||||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcct 33
>41774_bdi-MIR393a:mirbase
Length = 159
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcct 33
||||||||||||||||||||||||
Sbjct: 35 atccaaagggatcgcattgatcct 58
>41132_tcc-MIR393a:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcct 33
||||||||||||||||||||||||
Sbjct: 20 atccaaagggatcgcattgatcct 43
>42566_sbi-MIR393:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 19 atccaaagggatcgcattgatcc 41
>41642_vvi-MIR393b:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>41418_ptc-MIR393b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>41417_ptc-MIR393a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>40707_mtr-MIR393b:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 5 atccaaagggatcgcattgatcc 27
>40470_gma-MIR393:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atccaaagggatcgcattgatcc 32
|||||||||||||||||||||||
Sbjct: 10 atccaaagggatcgcattgatcc 32
>42787_zma-MIR393b:mirbase
Length = 108
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatcc 32
||||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatcc 23
>41641_vvi-MIR393a:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatcc 32
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>42788_zma-MIR393c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatc 22
>42786_zma-MIR393a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>42567_sbi-MIR393b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>41999_osa-MIR393b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>41998_osa-MIR393b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>41775_bdi-MIR393b:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatc 62
>41420_ptc-MIR393d:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41419_ptc-MIR393c:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41133_tcc-MIR393b:mirbase
Length = 158
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>41054_ghr-MIR393:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40373_rco-MIR393:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tccaaagggatcgcattgatc 31
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
