miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;EU549400.1/212-328 3702:Arabidopsis thaliana (thale
cress)
Length = 117
Score = 232 bits (117), Expect = 8e-61
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtgtatata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtgtatata 60
Query: 61 tatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgttag 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgttag 117
>RF00688;MIR394;EU549378.1/213-333 3702:Arabidopsis thaliana (thale
cress)
Length = 121
Score = 206 bits (104), Expect = 5e-53
Identities = 117/121 (96%), Gaps = 4/121 (3%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtg----ta 56
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 cttacagtcatctttggcattctgtccacctccttctatacatatatgcatgtgtatata 60
Query: 57 tatatatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgtta 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatatatatgcgtttcgtgtgaaagaaggaggtgggtatactgccaatagagatctgtta 120
Query: 117 g 117
|
Sbjct: 121 g 121
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 83 aggaggtgggtatactgccaatagagatctgttag 117
|||||||||| ||||||||||||||||||||||||
Sbjct: 86 aggaggtgggcatactgccaatagagatctgttag 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tctttggcattctgtccacctcctt 35
|||||||||||||||||||||||||
Sbjct: 11 tctttggcattctgtccacctcctt 35
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 83 aggaggtgggtatactgccaatagagatctgttag 117
|||||||||| ||||||||||||||||||||||||
Sbjct: 87 aggaggtgggcatactgccaatagagatctgttag 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcct 34
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 84 ggaggtgggtatactgccaatagagatctgttag 117
||||||||| |||||||||| |||||||||||||
Sbjct: 79 ggaggtgggcatactgccaacagagatctgttag 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cttacagtcatctttggcattctgtccacctcc 33
||||||| ||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcc 33
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tctttggcattctgtccacctcctt 35
|||||||||||||||||||||||||
Sbjct: 13 tctttggcattctgtccacctcctt 37
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctt 35
||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcctt 35
>RF00688;MIR394;ABXC01001499.1/165004-165103 4558:Sorghum bicolor
(sorghum)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctt 35
||||||||||||||||||||||
Sbjct: 16 ttggcattctgtccacctcctt 37
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctt 35
||||||||||||||||||||||
Sbjct: 16 ttggcattctgtccacctcctt 37
