miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47001_ath-miR394b:pmrd
Length = 121
Score = 240 bits (121), Expect = 2e-64
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
Query: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
Query: 121 g 121
|
Sbjct: 121 g 121
>47000_ath-miR394a:pmrd
Length = 117
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 87 aggaggtgggcatactgccaatagagatctgttag 121
|||||||||| ||||||||||||||||||||||||
Sbjct: 83 aggaggtgggtatactgccaatagagatctgttag 117
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagtcatctttggcattctgtccacctcct 34
>48920_osa-miR394:pmrd
Length = 110
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 agagatctttggcattctgtccacctcct 34
|||| ||||||||||||||||||||||||
Sbjct: 6 agagttctttggcattctgtccacctcct 34
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 77 ggaggtgggcatactgccaat 97
>55064_zma-miR394a:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctctc 37
||||||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcctctc 44
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaat 108
>51918_ptc-miRf10096-akr:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||||| | |||||||||||||||||||||
Sbjct: 12 cttacagagtttattggcattctgtccacctcct 45
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 77 ggaggtgggcatactgccaa 96
>55065_zma-miR394b:pmrd
Length = 122
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaat 108
|||||||||||||||||||||
Sbjct: 84 ggaggtgggcatactgccaat 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>54853_vvi-miR394c:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>54851_vvi-miR394a:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 13 tttggcattctgtccacctcc 33
|||||||||||||||||||||
Sbjct: 10 tttggcattctgtccacctcc 30
>54472_sbi-miR394b:pmrd
Length = 111
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcct 41
>54471_sbi-miR394a:pmrd
Length = 110
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcct 34
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcct 41
>54852_vvi-miR394b:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88 ggaggtgggcatactgccaa 107
||||||||||||||||||||
Sbjct: 62 ggaggtgggcatactgccaa 81
>48502_ghr-miR394:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcc 33
||||||||||||||||||||
Sbjct: 1 ttggcattctgtccacctcc 20
