miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AC009978.3/24986-25106 3702:Arabidopsis thaliana
(thale cress)
Length = 121
Score = 240 bits (121), Expect = 3e-63
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
Query: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
Query: 121 g 121
|
Sbjct: 121 g 121
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 129 bits (65), Expect = 9e-30
Identities = 108/121 (89%), Gaps = 1/121 (0%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
||||||||| |||||||||||||||||||||||| ||| |||| | |||||| ||||||
Sbjct: 1 cttacagagttctttggcattctgtccacctcctttctgaatatatttgtgta-taagtg 59
Query: 61 tacgtatctacggtgtgtttcgtaagaggaggtgggcatactgccaatagagatctgtta 120
|||| | ||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 60 tacgcaactacgttgtgttttgtgtgaggaggtgggcatactgccaatagagatctgtta 119
Query: 121 g 121
|
Sbjct: 120 g 120
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 69.9 bits (35), Expect = 7e-12
Identities = 100/122 (81%), Gaps = 11/122 (9%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcctctctctatatttatgtgtaataagtg 60
||||||||||||||||||||||||||||||||| || |||| | ||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcccctacctatgtatatgtgta------- 53
Query: 61 tacgtatctacggtgtgtttcgt-aagaggaggtgggcatactgccaatagagatctgtt 119
|||||||| ||||||| || | | |||||||||||||||||||| |||||||||||
Sbjct: 54 ---ttatctacgttgtgttttgtgagggggaggtgggcatactgccaacagagatctgtt 110
Query: 120 ag 121
||
Sbjct: 111 ag 112
>RF00688;MIR394;EU549378.1/213-333 3702:Arabidopsis thaliana (thale
cress)
Length = 121
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 87 aggaggtgggcatactgccaatagagatctgttag 121
|||||||||| ||||||||||||||||||||||||
Sbjct: 87 aggaggtgggtatactgccaatagagatctgttag 121
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagtcatctttggcattctgtccacctcct 34
>RF00688;MIR394;EU549400.1/212-328 3702:Arabidopsis thaliana (thale
cress)
Length = 117
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 87 aggaggtgggcatactgccaatagagatctgttag 121
|||||||||| ||||||||||||||||||||||||
Sbjct: 83 aggaggtgggtatactgccaatagagatctgttag 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||| |||||||||||||||||||||||||
Sbjct: 1 cttacagtcatctttggcattctgtccacctcct 34
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcc 33
||||||||| | |||||||||||||||||||||
Sbjct: 1 cttacagagttttttggcattctgtccacctcc 33
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 agagatctttggcattctgtccacctcct 34
|||| ||||||||||||||||||||||||
Sbjct: 8 agagttctttggcattctgtccacctcct 36
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ttggcattctgtccacctcctctc 37
||||||||||||||||||||||||
Sbjct: 17 ttggcattctgtccacctcctctc 40
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 87 aggaggtgggcatactgccaatagagatctgttag 121
||||||||||||||||| ||| |||| ||||||||
Sbjct: 87 aggaggtgggcatactgtcaacagagctctgttag 121
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||||| | |||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcct 34
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 1 cttacagagatctttggcattctgtccacctcct 34
||||||||| | |||||||||||||||||||||
Sbjct: 1 cttacagagcttattggcattctgtccacctcct 34
