miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 174 bits (88), Expect = 1e-43
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1 atgtccccatgagttccctttaacgcttcattgttaaatactcaaagccacattggtttg 60
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 atgtccacatgagttccctttaacgcttcattgttgaatactcaaagccacattggtttg 60
Query: 61 tatacaacactgaagtgtttggggggactcttggtgtcat 100
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 tatataacactgaagtgtttggggggactcttggtgtcat 100
>RF00451;mir-395;AC189385.2/27677-27556 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 71.9 bits (36), Expect = 1e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 57 tttgtatacaacactgaagtgtttggggggactcttggtg 96
|||||||||||||||||||||||||||||||||| |||||
Sbjct: 79 tttgtatacaacactgaagtgtttggggggactcgtggtg 118
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 ccccatgagttccctttaacgcttcattgt 34
||||||||||||||||||||||||||||||
Sbjct: 5 ccccatgagttccctttaacgcttcattgt 34
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactcttggtgtcat 100
|||||||||||||||||| ||||||||||||||
Sbjct: 47 cactgaagtgtttgggggaactcttggtgtcat 79
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| ||||||||||||||
Sbjct: 55 actgaagtgtttgggggaactcttggtgtcat 86
>RF00451;mir-395;FM164151.1/264-375 3702:Arabidopsis thaliana
(thale cress)
Length = 112
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 atgtccccatgagttccctttaacgcttcattgtt 35
|||||||| ||||||||||| ||||||||||||||
Sbjct: 1 atgtccccttgagttcccttaaacgcttcattgtt 35
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 aacactgaagtgtttggggggactcttggtg 96
|||||||||||||||||||||||||| ||||
Sbjct: 78 aacactgaagtgtttggggggactctaggtg 108
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactcttggtgtcat 100
|||||||||||||||||| |||| |||||||||
Sbjct: 67 cactgaagtgtttgggggaactcctggtgtcat 99
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 67 acactgaagtgtttggggggactcttggtgtca 99
||||||||||||||||||| |||| ||||||||
Sbjct: 66 acactgaagtgtttgggggaactcctggtgtca 98
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 71 actgaagtgtttgggggaactcctggtgtcat 102
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtcat 103
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 63 actgaagtgtttgggggaactcctggtgtcat 94
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 57 actgaagtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 57 actgaagtgtttgggggaactcctggtgtcat 88
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactcttg 93
|||||||||||||||||| |||||||
Sbjct: 47 cactgaagtgtttgggggaactcttg 72
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtg 96
||||||||||||||| ||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtgtcat 100
||||||||||||||| ||||||||| ||||
Sbjct: 62 tgaagtgtttgggggaactcttggtatcat 91
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtg 96
||||||||||||||| ||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtg 96
||||||||||||||| ||||||||||
Sbjct: 56 tgaagtgtttgggggaactcttggtg 81
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtg 96
||||||||||||||| ||||||||||
Sbjct: 85 tgaagtgtttgggggaactcttggtg 110
