miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47004_ath-miR395c:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 atgtccacatgagttccctttaacgcttcattgttgaatactcaaagccacattggtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtccacatgagttccctttaacgcttcattgttgaatactcaaagccacattggtttg 60
Query: 61 tatataacactgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatataacactgaagtgtttggggggactcttggtgtcat 100
>47003_ath-miR395b:pmrd
Length = 100
Score = 174 bits (88), Expect = 8e-45
Identities = 97/100 (97%)
Strand = Plus / Plus
Query: 1 atgtccacatgagttccctttaacgcttcattgttgaatactcaaagccacattggtttg 60
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 atgtccccatgagttccctttaacgcttcattgttaaatactcaaagccacattggtttg 60
Query: 61 tatataacactgaagtgtttggggggactcttggtgtcat 100
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 61 tatacaacactgaagtgtttggggggactcttggtgtcat 100
>47007_ath-miR395f:pmrd
Length = 112
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 aacactgaagtgtttggggggactcttggtg 96
|||||||||||||||||||||||||| ||||
Sbjct: 78 aacactgaagtgtttggggggactctaggtg 108
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 atgtccacatgagttccctttaacgcttcattgtt 35
|||||| | ||||||||||| ||||||||||||||
Sbjct: 1 atgtccccttgagttcccttaaacgcttcattgtt 35
>54859_vvi-miR395f:pmrd
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactcttggtgtcat 100
|||||||||||||||||| |||| |||||||||
Sbjct: 54 cactgaagtgtttgggggaactcctggtgtcat 86
>54865_vvi-miR395l:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 56 actgaagtgtttgggggaactcctggtgtcat 87
>54863_vvi-miR395j:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 55 actgaagtgtttgggggaactcctggtgtcat 86
>54862_vvi-miR395i:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 55 actgaagtgtttgggggaactcctggtgtcat 86
>54857_vvi-miR395d:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 55 actgaagtgtttgggggaactcctggtgtcat 86
>52060_ptc-miRf10238-akr:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| |||||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtcat 103
>51725_ptc-miR395b:pmrd
Length = 98
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactcttggtgtca 99
|||||||||||||||||| |||| ||||||||
Sbjct: 67 cactgaagtgtttgggggaactcctggtgtca 98
>51733_ptc-miR395j:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtca 99
||||||||||||||||| |||| ||||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtca 102
>51732_ptc-miR395i:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtca 99
||||||||||||||||| |||| ||||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtca 102
>51731_ptc-miR395h:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtca 99
||||||||||||||||| |||| ||||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtca 102
>51730_ptc-miR395g:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtca 99
||||||||||||||||| |||| ||||||||
Sbjct: 72 actgaagtgtttgggggaactcctggtgtca 102
>51727_ptc-miR395d:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtca 99
||||||||||||||||| |||| ||||||||
Sbjct: 71 actgaagtgtttgggggaactcctggtgtca 101
>51726_ptc-miR395c:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtca 99
||||||||||||||||| |||| ||||||||
Sbjct: 71 actgaagtgtttgggggaactcctggtgtca 101
>55067_zma-miR395b:pmrd
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtgtcat 100
||||||||||||||| ||||||||| ||||
Sbjct: 76 tgaagtgtttgggggaactcttggtatcat 105
>54478_sbi-miR395f:pmrd
Length = 122
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtg 96
||||||||||||||| ||||||||||
Sbjct: 84 tgaagtgtttgggggaactcttggtg 109
>54476_sbi-miR395d:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtg 96
||||||||||||||| ||||||||||
Sbjct: 66 tgaagtgtttgggggaactcttggtg 91
>55066_zma-miR395a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtgtca 99
||||||||||||||| ||||| |||||||
Sbjct: 111 tgaagtgtttgggggaactctgggtgtca 139
>54474_sbi-miR395b:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtgtca 99
||||||||||||||| |||||| ||||||
Sbjct: 67 tgaagtgtttgggggaactcttagtgtca 95
>51728_ptc-miR395e:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactcttggtg 96
|||||||||||||||||| ||||| ||||
Sbjct: 82 cactgaagtgtttgggggaactctgggtg 110
>48930_osa-miR395i:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggt 95
||||||||||||||| |||||||||
Sbjct: 70 tgaagtgtttgggggaactcttggt 94
>54866_vvi-miR395m:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtg 96
||||||||||||||||| |||| |||||
Sbjct: 61 actgaagtgtttgggggaactcctggtg 88
>54864_vvi-miR395k:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtg 96
||||||||||||||||| |||| |||||
Sbjct: 60 actgaagtgtttgggggaactcctggtg 87
>54861_vvi-miR395h:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtg 96
||||||||||||||||| |||| |||||
Sbjct: 61 actgaagtgtttgggggaactcctggtg 88
>54860_vvi-miR395g:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtgtcat 100
||||||||||||||||| |||| ||||||||
Sbjct: 55 actgaagtgtttgggggaactcccggtgtcat 86
>54858_vvi-miR395e:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtg 96
||||||||||||||||| |||| |||||
Sbjct: 61 actgaagtgtttgggggaactcctggtg 88
>54856_vvi-miR395c:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtg 96
||||||||||||||||| |||| |||||
Sbjct: 61 actgaagtgtttgggggaactcctggtg 88
>54855_vvi-miR395b:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 actgaagtgtttggggggactcttggtg 96
||||||||||||||||| |||| |||||
Sbjct: 59 actgaagtgtttgggggaactcctggtg 86
>51729_ptc-miR395f:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 68 cactgaagtgtttggggggactct 91
|||||||||||||||||| |||||
Sbjct: 82 cactgaagtgtttgggggaactct 105
>48923_osa-miR395b:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttggtgtc 98
||||||||||||||| |||||| |||||
Sbjct: 57 tgaagtgtttgggggaactcttagtgtc 84
>48732_mtr-miR395a:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 71 tgaagtgtttggggggactcttgg 94
||||||||||||||| ||||||||
Sbjct: 97 tgaagtgtttgggggaactcttgg 120
