miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47007_ath-miR395f:pmrd
Length = 112
Score = 222 bits (112), Expect = 4e-59
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 atgtccccttgagttcccttaaacgcttcattgttcatactttgttatcatctatcgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtccccttgagttcccttaaacgcttcattgttcatactttgttatcatctatcgatc 60
Query: 61 gatcaatcaatctgatgaacactgaagtgtttggggggactctaggtgacat 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcaatcaatctgatgaacactgaagtgtttggggggactctaggtgacat 112
>47004_ath-miR395c:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 78 aacactgaagtgtttggggggactctaggtg 108
|||||||||||||||||||||||||| ||||
Sbjct: 66 aacactgaagtgtttggggggactcttggtg 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 atgtccccttgagttcccttaaacgcttcattgtt 35
|||||| | ||||||||||| ||||||||||||||
Sbjct: 1 atgtccacatgagttccctttaacgcttcattgtt 35
>47003_ath-miR395b:pmrd
Length = 100
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 atgtccccttgagttcccttaaacgcttcattgtt 35
|||||||| ||||||||||| ||||||||||||||
Sbjct: 1 atgtccccatgagttccctttaacgcttcattgtt 35
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 78 aacactgaagtgtttggggggactctaggtg 108
|||||||||||||||||||||||||| ||||
Sbjct: 66 aacactgaagtgtttggggggactcttggtg 96
>48931_osa-miR395j:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgaagtgtttggggggactctaggtg 108
||||||||||||||| ||||||||||
Sbjct: 83 tgaagtgtttgggggaactctaggtg 108
>48929_osa-miR395h:pmrd
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgaagtgtttggggggactctaggtg 108
||||||||||||||| ||||||||||
Sbjct: 83 tgaagtgtttgggggaactctaggtg 108
>51728_ptc-miR395e:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 8e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 80 cactgaagtgtttggggggactctaggtg 108
|||||||||||||||||| ||||| ||||
Sbjct: 82 cactgaagtgtttgggggaactctgggtg 110
>51729_ptc-miR395f:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cactgaagtgtttggggggactct 103
|||||||||||||||||| |||||
Sbjct: 82 cactgaagtgtttgggggaactct 105
