miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;FM164151.1/264-375 3702:Arabidopsis thaliana (thale
           cress)
          Length = 112

 Score =  222 bits (112), Expect = 7e-58
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtccccttgagttcccttaaacgcttcattgttcatactttgttatcatctatcgatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtccccttgagttcccttaaacgcttcattgttcatactttgttatcatctatcgatc 60

                                                               
Query: 61  gatcaatcaatctgatgaacactgaagtgtttggggggactctaggtgacat 112
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatcaatcaatctgatgaacactgaagtgtttggggggactctaggtgacat 112




>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana (thale
           cress)
          Length = 100

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 78  aacactgaagtgtttggggggactctaggtg 108
           |||||||||||||||||||||||||| ||||
Sbjct: 66  aacactgaagtgtttggggggactcttggtg 96



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 1  atgtccccttgagttcccttaaacgcttcattgtt 35
          |||||| | ||||||||||| ||||||||||||||
Sbjct: 1  atgtccacatgagttccctttaacgcttcattgtt 35




>RF00451;mir-395;AC189385.2/27677-27556 51351:Brassica rapa subsp.
           pekinensis
          Length = 122

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 78  aacactgaagtgtttggggggactc 102
           |||||||||||||||||||||||||
Sbjct: 88  aacactgaagtgtttggggggactc 112



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 5  ccccttgagttcccttaaacgcttcattgt 34
          |||| ||||||||||| |||||||||||||
Sbjct: 5  ccccatgagttccctttaacgcttcattgt 34




>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
           (castor bean)
          Length = 109

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 81  actgaagtgtttggggggactctaggtg 108
           ||||||||||||||||| ||||||||||
Sbjct: 78  actgaagtgtttgggggaactctaggtg 105




>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
           (sorghum)
          Length = 109

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 83  tgaagtgtttggggggactctaggtg 108
           ||||||||||||||| ||||||||||
Sbjct: 80  tgaagtgtttgggggaactctaggtg 105




>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
           (sorghum)
          Length = 119

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 83  tgaagtgtttggggggactctaggtg 108
           ||||||||||||||| ||||||||||
Sbjct: 90  tgaagtgtttgggggaactctaggtg 115




>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 83  tgaagtgtttggggggactctaggtg 108
           ||||||||||||||| ||||||||||
Sbjct: 83  tgaagtgtttgggggaactctaggtg 108




>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
           Japonica Group
          Length = 112

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 83  tgaagtgtttggggggactctaggtg 108
           ||||||||||||||| ||||||||||
Sbjct: 83  tgaagtgtttgggggaactctaggtg 108