miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;FM164151.1/264-375 3702:Arabidopsis thaliana (thale
cress)
Length = 112
Score = 222 bits (112), Expect = 7e-58
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 atgtccccttgagttcccttaaacgcttcattgttcatactttgttatcatctatcgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtccccttgagttcccttaaacgcttcattgttcatactttgttatcatctatcgatc 60
Query: 61 gatcaatcaatctgatgaacactgaagtgtttggggggactctaggtgacat 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gatcaatcaatctgatgaacactgaagtgtttggggggactctaggtgacat 112
>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 78 aacactgaagtgtttggggggactctaggtg 108
|||||||||||||||||||||||||| ||||
Sbjct: 66 aacactgaagtgtttggggggactcttggtg 96
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 atgtccccttgagttcccttaaacgcttcattgtt 35
|||||| | ||||||||||| ||||||||||||||
Sbjct: 1 atgtccacatgagttccctttaacgcttcattgtt 35
>RF00451;mir-395;AC189385.2/27677-27556 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 78 aacactgaagtgtttggggggactc 102
|||||||||||||||||||||||||
Sbjct: 88 aacactgaagtgtttggggggactc 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 ccccttgagttcccttaaacgcttcattgt 34
|||| ||||||||||| |||||||||||||
Sbjct: 5 ccccatgagttccctttaacgcttcattgt 34
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 81 actgaagtgtttggggggactctaggtg 108
||||||||||||||||| ||||||||||
Sbjct: 78 actgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgaagtgtttggggggactctaggtg 108
||||||||||||||| ||||||||||
Sbjct: 80 tgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgaagtgtttggggggactctaggtg 108
||||||||||||||| ||||||||||
Sbjct: 90 tgaagtgtttgggggaactctaggtg 115
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgaagtgtttggggggactctaggtg 108
||||||||||||||| ||||||||||
Sbjct: 83 tgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 83 tgaagtgtttggggggactctaggtg 108
||||||||||||||| ||||||||||
Sbjct: 83 tgaagtgtttgggggaactctaggtg 108
