miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47009_ath-miR396b:pmrd
Length = 135
Score = 178 bits (90), Expect = 7e-46
Identities = 120/135 (88%)
Strand = Plus / Plus
Query: 1 ggtcatacttttccacagctttcttgaactttctttttcatttccattgnnnnnnnctta 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1 ggtcatacttttccacagctttcttgaactttctttttcatttccattgtttttttctta 60
Query: 61 aacaaaagtaagaagnnnnnnnnctttaagattaagcattttggaagctcaagaaagctg 120
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 61 aacaaaagtaagaagaaaaaaaactttaagattaagcattttggaagctcaagaaagctg 120
Query: 121 tgggaaaacatgaca 135
|||||||||||||||
Sbjct: 121 tgggaaaacatgaca 135
>48374_bna-miR396a:pmrd
Length = 117
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaactttctttttcatttcc 45
|||||||||||||||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactttctttttcatttcc 35
>51564_pta-miR396:pmrd
Length = 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 2 gtcatacttttccacagctttcttgaacttt 32
|||||||||||||||||||||||||||||||
Sbjct: 8 gtcatacttttccacagctttcttgaacttt 38
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 102 tggaagctcaagaaagctgtgggaaaacatg 132
|||||||||||||||||||||||| ||||||
Sbjct: 31 tggaagctcaagaaagctgtgggagaacatg 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 cttttccacagctttcttgaactt 31
||||||||||||||||||||||||
Sbjct: 137 cttttccacagctttcttgaactt 114
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 102 tggaagctcaagaaagctgtgggaaaacatg 132
|||||||||||||||||||||||| ||||||
Sbjct: 31 tggaagctcaagaaagctgtgggagaacatg 1
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 cttttccacagctttcttgaactt 31
||||||||||||||||||||||||
Sbjct: 137 cttttccacagctttcttgaactt 114
>51738_ptc-miR396e:pmrd
Length = 145
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtcatacttttccacagctttcttgaactt 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaactt 31
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 102 tggaagctcaagaaagctgtgggaaaacatg 132
|||||||||||||||||||||||| ||||||
Sbjct: 114 tggaagctcaagaaagctgtgggagaacatg 144
>51737_ptc-miR396d:pmrd
Length = 154
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtcatacttttccacagctttcttgaactt 31
|||||| ||||||||||||||||||||||||
Sbjct: 1 ggtcatgcttttccacagctttcttgaactt 31
Score = 46.1 bits (23), Expect = 7e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 102 tggaagctcaagaaagctgtgggaaaacatg 132
||||||||||||||||| |||||| ||||||
Sbjct: 123 tggaagctcaagaaagccgtgggagaacatg 153
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 103 ggaagctcaagaaagctgtgggaaaacatgac 134
||||| ||||||||||||||| ||| ||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaagcatgac 2
>48579_gma-miR396b:pmrd
Length = 126
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 ggtcatacttttccacagctttcttgaactt 31
|||||| ||||||||||||||||||||||||
Sbjct: 11 ggtcatgcttttccacagctttcttgaactt 41
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 104 gaagctcaagaaagctgtggga 125
||||||||||||||||||||||
Sbjct: 86 gaagctcaagaaagctgtggga 107
>54868_vvi-miR396a:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 2 gtcatacttttccacagctttcttgaact 30
||||| |||||||||||||||||||||||
Sbjct: 5 gtcatgcttttccacagctttcttgaact 33
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 104 gaagctcaagaaagctgtggga 125
||||||||||||||||||||||
Sbjct: 84 gaagctcaagaaagctgtggga 105
>54869_vvi-miR396b:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cttttccacagctttcttgaactt 31
||||||||||||||||||||||||
Sbjct: 11 cttttccacagctttcttgaactt 34
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 104 gaagctcaagaaagctgtgggaaaacatg 132
|||| ||||||||||||||||||| ||||
Sbjct: 76 gaagttcaagaaagctgtgggaaaccatg 104
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 8 cttttccacagctttcttgaactt 31
||||||||||||||||||||||||
Sbjct: 145 cttttccacagctttcttgaactt 122
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 102 tggaagctcaagaaagctgtgggaaaacat 131
||||||||||||||||| |||||| |||||
Sbjct: 30 tggaagctcaagaaagccgtgggagaacat 1
>48748_mtr-miR396a:pmrd
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cttttccacagctttcttgaactt 31
||||||||||||||||||||||||
Sbjct: 3 cttttccacagctttcttgaactt 26
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 104 gaagctcaagaaagctgtggga 125
||||||||||||||||||||||
Sbjct: 67 gaagctcaagaaagctgtggga 88
>48580_gma-miR396c:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 cttttccacagctttcttgaactt 31
||||||||||||||||||||||||
Sbjct: 18 cttttccacagctttcttgaactt 41
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 9 ttttccacagctttcttgaactt 31
|||||||||||||||||||||||
Sbjct: 95 ttttccacagctttcttgaactt 73
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 103 ggaagctcaagaaagctgtgggaaaacatg 132
||||| ||||||||||||||| ||||||||
Sbjct: 71 ggaagttcaagaaagctgtggaaaaacatg 100
>51736_ptc-miR396c:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttttccacagctttcttgaactt 31
|||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaactt 31
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 103 ggaagctcaagaaagctgtgggaaaacatg 132
||||| ||||||||||||||| ||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaaacatg 4
>55078_zma-miR396g:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>55077_zma-miR396f:pmrd
Length = 166
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 2 tttccacagctttcttgaactt 23
>54487_sbi-miR396c:pmrd
Length = 162
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 20 tttccacagctttcttgaactt 41
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 104 gaagctcaagaaagctgtgggaaaacatgaca 135
|||| |||||||||||||||||| | ||||||
Sbjct: 122 gaaggtcaagaaagctgtgggaagaaatgaca 153
>48947_osa-miR396c:pmrd
Length = 141
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tttccacagctttcttgaactt 31
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
>46888_aqc-miR396b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaacttt 32
||||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaacttt 22
>51740_ptc-miR396g:pmrd
Length = 168
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 105 aagctcaagaaagctgtgggaaaacatga 133
|||||||||||||| ||||||||| ||||
Sbjct: 140 aagctcaagaaagccgtgggaaaatatga 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 cttttccacagctttcttgaactt 31
||||||||| ||||||||||||||
Sbjct: 8 cttttccacggctttcttgaactt 31
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54584_smo-miR396:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 104 gaagctcaagaaagctgtgggaaa 127
|||| |||||||||||||||||||
Sbjct: 134 gaagttcaagaaagctgtgggaaa 157
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52339_ptc-miRf10517-akr:pmrd
Length = 164
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 cttttccacagctttcttgaactt 31
||||||||| ||||||||||||||
Sbjct: 5 cttttccacggctttcttgaactt 28
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 105 aagctcaagaaagctgtgggaaaa 128
|||||||||||||| |||||||||
Sbjct: 137 aagctcaagaaagccgtgggaaaa 160
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11 ttccacagctttcttgaact 30
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
