miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47010_ath-miR397a:pmrd
Length = 107
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaatgaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaat 60
Query: 61 ggattaaaagaatttataccagcgttgcgctcaattatgtttttcta 107
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggattaaaagaatttataccagcgttgcgctcaattatgtttttcta 107
>48376_bna-miR397b:pmrd
Length = 96
Score = 97.6 bits (49), Expect = 2e-21
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 6 gaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaatggatt 65
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 1 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 60
Query: 66 aaaagaatttataccagcgttgcgctcaattatgttt 102
||| |||||| | || ||||| ||||||||||||||
Sbjct: 61 aaagcaatttacatcaacgttg-gctcaattatgttt 96
>48375_bna-miR397a:pmrd
Length = 96
Score = 97.6 bits (49), Expect = 2e-21
Identities = 86/97 (88%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 6 gaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaatggatt 65
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 1 gaacatcattgagtgcagcgttgatgtgatttacttctctttttcattgttgaatggatt 60
Query: 66 aaaagaatttataccagcgttgcgctcaattatgttt 102
||| |||||| | || ||||| ||||||||||||||
Sbjct: 61 aaagcaatttacatcaacgttg-gctcaattatgttt 96
>47011_ath-miR397b:pmrd
Length = 109
Score = 75.8 bits (38), Expect = 6e-15
Identities = 92/109 (84%), Gaps = 2/109 (1%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcagcgttgatgtaattt--cgttttgtttttcattgttga 58
|||||||||||||||||||||| |||||||||||||| | | || | || |||||||||
Sbjct: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
Query: 59 atggattaaaagaatttataccagcgttgcgctcaattatgtttttcta 107
|| |||||| | | |||| ||||||||| |||||||||||||||||
Sbjct: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttcta 109
>54873_vvi-miR397b:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcagcgttgatg 31
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>54872_vvi-miR397a:pmrd
Length = 118
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcagcgttgatg 31
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>51741_ptc-miR397a:pmrd
Length = 120
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>48959_osa-miR397a:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>48958_osa-miR397a:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>48334_bdi-miR2508:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 8 catcattgagtgcagcgttgatg 30
>48315_bdi-miR397:pmrd
Length = 124
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 16 catcattgagtgcagcgttgatg 38
>54560_sly-miR397:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcagcgttgatg 31
||||| |||||||||||||||||||
Sbjct: 14 aacatgattgagtgcagcgttgatg 38
>51742_ptc-miR397b:pmrd
Length = 114
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 cattgagtgcagcgttgatgtaatt 36
|||||||||||||||||||| ||||
Sbjct: 12 cattgagtgcagcgttgatgaaatt 36
