miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaatgaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaat 60
Query: 61 ggattaaaagaatttataccagcgttgcgctcaattatgtttttc 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggattaaaagaatttataccagcgttgcgctcaattatgtttttc 105
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 103 bits (52), Expect = 5e-22
Identities = 89/100 (89%), Gaps = 1/100 (1%)
Strand = Plus / Plus
Query: 6 gaacatcattgagtgcagcgttgatgtaatttcgttttgtttttcattgttgaatggatt 65
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||
Sbjct: 6 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 65
Query: 66 aaaagaatttataccagcgttgcgctcaattatgtttttc 105
||| |||||| | || ||||| |||||||||||||||||
Sbjct: 66 aaagcaatttacatcaacgttg-gctcaattatgtttttc 104
>RF00704;MIR397;AL161536.2/165502-165396 3702:Arabidopsis thaliana
(thale cress)
Length = 107
Score = 71.9 bits (36), Expect = 2e-12
Identities = 90/107 (84%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcagcgttgatgtaattt--cgttttgtttttcattgttga 58
|||||||||||||||||||||| |||||||||||||| | | || | || |||||||||
Sbjct: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
Query: 59 atggattaaaagaatttataccagcgttgcgctcaattatgtttttc 105
|| |||||| | | |||| ||||||||| |||||||||||||||
Sbjct: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttc 107
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcagcgttgatg 31
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
Populus deltoides
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcagcgttgatg 31
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcagcgttgatg 31
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 catcattgagtgcagcgttgatg 31
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
