miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47011_ath-miR397b:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
Query: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttcta 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttcta 109
>47010_ath-miR397a:pmrd
Length = 107
Score = 75.8 bits (38), Expect = 6e-15
Identities = 92/109 (84%), Gaps = 2/109 (1%)
Strand = Plus / Plus
Query: 1 tgaatgaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttga 60
|||||||||||||||||||||| |||||||||||||| | | || | || |||||||||
Sbjct: 1 tgaatgaacatcattgagtgcagcgttgatgtaattt--cgttttgtttttcattgttga 58
Query: 61 attaattaaagaagtatatatcagcgttgcattcaattatgtttttcta 109
|| |||||| | | |||| ||||||||| |||||||||||||||||
Sbjct: 59 atggattaaaagaatttataccagcgttgcgctcaattatgtttttcta 107
>48376_bna-miR397b:pmrd
Length = 96
Score = 52.0 bits (26), Expect = 9e-08
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 6 gaacatcattgagtgcatcgttgatgtaattttacttattttattccattgttgaattaa 65
||||||||||||||||| ||||||||| | ||||||||| || || ||||||||||| |
Sbjct: 1 gaacatcattgagtgcagcgttgatgtga-tttacttatctt-tttcattgttgaatgga 58
Query: 66 ttaaag 71
||||||
Sbjct: 59 ttaaag 64
>48375_bna-miR397a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 gaacatcattgagtgcatcgttgatgtaattt 37
||||||||||||||||| ||||||||| ||||
Sbjct: 1 gaacatcattgagtgcagcgttgatgtgattt 32
>54873_vvi-miR397b:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcatcgttgatg 31
|||||||||||||||| ||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>54872_vvi-miR397a:pmrd
Length = 118
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 aacatcattgagtgcatcgttgatg 31
|||||||||||||||| ||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31