miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47014_ath-miR398c:pmrd
Length = 115
Score = 228 bits (115), Expect = 7e-61
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
Query: 61 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 115
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 115
>47013_ath-miR398b:pmrd
Length = 116
Score = 190 bits (96), Expect = 2e-49
Identities = 112/116 (96%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1 tggatctcgacagggttgatatgagaacacacgagtaatcaacggctgtaatgacgctac 60
Query: 61 gtcattgttacagctctcg-tttcatgtgttctcaggtcacccctgctgagctctt 115
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcattgttacagctctcgttttcatgtgttctcaggtcacccctgctgagctctt 116
>54876_vvi-miR398c:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcacccctgctg 108
||||||||||||||||| |||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgctg 81
>54875_vvi-miR398b:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcacccctgctg 108
||||||||||||||||| |||||||||
Sbjct: 55 tcatgtgttctcaggtcgcccctgctg 81
>51745_ptc-miR398b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 81 ttcatgtgttctcaggtcacccctgc 106
|||||||||||||||||| |||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgc 77
>54874_vvi-miR398a:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 73 tgtgttctcaggtcacccct 92
>52988_ptc-miRf11166-akr:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
>51746_ptc-miR398c:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 catgtgttctcaggtcacccctgc 106
|||||||||||||||| |||||||
Sbjct: 66 catgtgttctcaggtcgcccctgc 89
>51744_ptc-miR398a:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccct 99
>48962_osa-miR398a:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>48749_mtr-miR398a:pmrd
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 82 tcatgtgttctcaggtcacccctg 105
||||||||||||||||| ||||||
Sbjct: 54 tcatgtgttctcaggtcgcccctg 77
>48582_gma-miR398b:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 96 tgtgttctcaggtcacccct 115
>48581_gma-miR398a:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>48511_ghr-miR398:pmrd
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 47 tgtgttctcaggtcacccct 66
>48391_bol-miR398a:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 71 tgtgttctcaggtcacccct 90
>48390_bol-miR398a:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 71 tgtgttctcaggtcacccct 90
>47012_ath-miR398a:pmrd
Length = 105
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccct 94
>46890_aqc-miR398b:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 83 catgtgttctcaggtcacccctgc 106
|||||||||||||||| |||||||
Sbjct: 70 catgtgttctcaggtcgcccctgc 93
>46889_aqc-miR398a:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 85 tgtgttctcaggtcacccct 104
||||||||||||||||||||
Sbjct: 66 tgtgttctcaggtcacccct 85
