miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47015_ath-miR399a:pmrd
Length = 123
Score = 244 bits (123), Expect = 1e-65
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatgcattacagggtaagatctctattggcaggaaaccattacttagatctttgcatct 60
Query: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctttatgcattgcttttaattagtgagttatctgccaaaggagatttgccctgtaattct 120
Query: 121 tct 123
|||
Sbjct: 121 tct 123
>48377_bna-miR399:pmrd
Length = 102
Score = 127 bits (64), Expect = 2e-30
Identities = 93/102 (91%), Gaps = 3/102 (2%)
Strand = Plus / Plus
Query: 10 acagggtaagatctctattggcaggaaaccattacttagatctttgcatctctttatgca 69
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 1 acagggcaagatctctattggcagaaaaccattacttagatctttgcatctctttctgca 60
Query: 70 ttgcttttaattagtgagttatctgccaaaggagatttgccc 111
||| ||| ||||||||| |||||||||||||||||||||
Sbjct: 61 ttgattt---gtagtgagttctctgccaaaggagatttgccc 99
>47020_ath-miR399f:pmrd
Length = 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaattct 120
||||||||||||||||||||| ||||||||
Sbjct: 86 tctgccaaaggagatttgcccggtaattct 115
>54881_vvi-miR399e:pmrd
Length = 112
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaattcttct 123
||||||||||||||||||||| | |||||||||
Sbjct: 80 tctgccaaaggagatttgcccggcaattcttct 112
>48754_mtr-miR399e:pmrd
Length = 134
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 80 ttagtgagttatctgccaaaggagatttgccc 111
|||||| || ||||||||||||||||||||||
Sbjct: 82 ttagtgtgtaatctgccaaaggagatttgccc 113
>48970_osa-miR399g:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 tatctgccaaaggagatttgccc 111
|||||||||||||||||||||||
Sbjct: 85 tatctgccaaaggagatttgccc 107
>55095_zma-miR399e:pmrd
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaa 116
|||||||||||||| |||||||||||
Sbjct: 83 tctgccaaaggagagttgccctgtaa 108
>54497_sbi-miR399i:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaa 116
|||||||||||||| |||||||||||
Sbjct: 80 tctgccaaaggagagttgccctgtaa 105
>51749_ptc-miR399c:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tgccaaaggagatttgccctgtaattcttc 122
||||||||||||||||||| | ||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>51748_ptc-miR399b:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 tgccaaaggagatttgccctgtaattcttc 122
||||||||||||||||||| | ||||||||
Sbjct: 97 tgccaaaggagatttgcccggcaattcttc 126
>48750_mtr-miR399a:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 atctgccaaaggagatttgccc 111
||||||||||||||||||||||
Sbjct: 92 atctgccaaaggagatttgccc 113
>54879_vvi-miR399c:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 90 atctgccaaaggagatttgccctgt 114
||||||||||||||| |||||||||
Sbjct: 49 atctgccaaaggagagttgccctgt 73
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccctgtaattc 119
|||||||||||||| ||||||||| ||||
Sbjct: 65 tctgccaaaggagaattgccctgttattc 93
>54494_sbi-miR399f:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccc 111
|||||||||||||||||||||
Sbjct: 79 tctgccaaaggagatttgccc 99
>48969_osa-miR399f:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccc 111
|||||||||||||||||||||
Sbjct: 85 tctgccaaaggagatttgccc 105
>48752_mtr-miR399c:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagatttgccctg 113
|||||||||||||||||||||
Sbjct: 80 tgccaaaggagatttgccctg 100
>48513_ghr-miR399b:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93 tgccaaaggagatttgccctg 113
|||||||||||||||||||||
Sbjct: 57 tgccaaaggagatttgccctg 77
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccc 111
|||||||||||||||||||||
Sbjct: 64 tctgccaaaggagatttgccc 84
>47018_ath-miR399d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgccc 111
|||||||||||||||||||||
Sbjct: 68 tctgccaaaggagatttgccc 88
>46891_aqc-miR399:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 88 ttatctgccaaaggagatttgccct 112
||||||||||||||||| |||||||
Sbjct: 67 ttatctgccaaaggagagttgccct 91
>54883_vvi-miR399g:pmrd
Length = 113
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccc 111
||||||||||||||||||||
Sbjct: 82 ctgccaaaggagatttgccc 101
>54882_vvi-miR399f:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccctgtaattcttct 123
||||| ||||||||||| |||| |||||||||
Sbjct: 75 ctgccgaaggagatttgtcctgcaattcttct 106
>54493_sbi-miR399e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccc 111
||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgccc 105
>51747_ptc-miR399a:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccc 111
||||||||||||||||||||
Sbjct: 90 ctgccaaaggagatttgccc 109
>49373_osa-miRf10158-akr:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccc 111
||||||||||||||||||||
Sbjct: 84 ctgccaaaggagatttgccc 103
>48968_osa-miR399e:pmrd
Length = 118
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 ctgccaaaggagatttgccc 111
||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgccc 106
>47019_ath-miR399e:pmrd
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 tctgccaaaggagatttgcc 110
||||||||||||||||||||
Sbjct: 77 tctgccaaaggagatttgcc 96
